BIONAMES.ORG

BioNames

A database linking taxonomic names to their original descriptions, to taxa, and to phylogenies. See http:/ dx.doi.org/10.7717/peerj.190. For background, and About. The core of BioNames are the over 4 million animal names listed by the ION. Database. BioNames enhances these by linking (wherever possible) to the original description, so you can see the evidence for a name. Can be read directly in BioNames. BioNames includes phylogenies from the PhyLoTA. BioNames is being developed by Roderic D M Page.

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BioNames | bionames.org Reviews

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A database linking taxonomic names to their original descriptions, to taxa, and to phylogenies. See http:/ dx.doi.org/10.7717/peerj.190. For background, and About. The core of BioNames are the over 4 million animal names listed by the ION. Database. BioNames enhances these by linking (wherever possible) to the original description, so you can see the evidence for a name. Can be read directly in BioNames. BioNames includes phylogenies from the PhyLoTA. BioNames is being developed by Roderic D M Page.

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3 downloads

4 labs

5 bionames

6 for credits

7 recent additions

8 tweets by @bionames

9 taxonomic names

10 publications

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BioNames | bionames.org Reviews

https://bionames.org

A database linking taxonomic names to their original descriptions, to taxa, and to phylogenies. See http:/ dx.doi.org/10.7717/peerj.190. For background, and About. The core of BioNames are the over 4 million animal names listed by the ION. Database. BioNames enhances these by linking (wherever possible) to the original description, so you can see the evidence for a name. Can be read directly in BioNames. BioNames includes phylogenies from the PhyLoTA. BioNames is being developed by Roderic D M Page.

INTERNAL PAGES

bionames.org

1

API documentation

http://www.bionames.org/apidocs

This is preliminary and incomplete documentation. Unless otherwise stated, all methods return JSON, and support the "callback" parameter. Return information on an object. Return object in JSON. Return URL of thumbnail for image of object. Return thumbnail image of object. Return information about an author. Return names of coauthors. Http:/ bionames.org/api/authors/Darrel R Frost/coauthors. Http:/ bionames.org/api/authors/Darrel R Frost/publications. Taxa published in papers with this author.

2

BioNames Data

http://www.bionames.org/data

You can download a Darwin Core Archive of the database below, or individual components of that archive. Versions are archived on Zenodo.

3

BioNames Labs

http://www.bionames.org/labs

Experiments in data analysis and visualisation using BioNames data. Avibase Peter's Check-list of Birds of the World.

4

Title

http://www.bionames.org/trees/phylota/ti156509_cl8_db184

Version 184, with additional data from EMBL. Sanderson, M., Boss, D., Chen, D., Cranston, K., and Wehe, A. (2008). The PhyLoTA Browser: Processing GenBank for Molecular Phylogenetics Research. Systematic Biology, 57(3), 335-346. Comments powered by Disqus.

5

Dashboard

http://www.bionames.org/dashboard

Tasks running in database. Sources of publications in BioNames. Total number of identifiers by category. Numbers of documents by category. Numbers of URL and PDF links.

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iphylo.blogspot.com

iPhylo: Testing the GBIF taxonomy with the graph database Neo4J

http://iphylo.blogspot.com/2015/08/testing-gbif-taxonomy-with-graph.html

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed. ISSN 2051-8188 View this blog in Magazine View. Friday, August 07, 2015. Testing the GBIF taxonomy with the graph database Neo4J. I've been playing with the graph database Neo4J. And the Open Tree of Life project use it in their tree machine. I created some GraphGists that explore various problems with the current GBIF taxonomy&...

bryozoa.net

Other Bryozoan WWW Resources

http://www.bryozoa.net/links.html

Bryozoa Information - General. NOTE: This list has not been updated for some time. Eventually, I will go through , adding, altering and removing as appropriate. Introduction to the Bryozoa. At The University of California Berkeley, Museum of Paleontology. Official registry of Zoological Nomenclature by ICZN. On the Open Tree of Life. On the Tree of Life. Searchable list of genera in zoology from 1758 to 1994. An Electronic Edition provided by the Smithsonian Institution. At Systema Naturae 2000. Among th...

iphylo.blogspot.com

iPhylo: August 2015

http://iphylo.blogspot.com/2015_08_01_archive.html

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed. ISSN 2051-8188 View this blog in Magazine View. Friday, August 14, 2015. Possible project: NameStream - a stream of new taxonomic names. Yet another barely thought out project, although this one has some crude code. To feel swamped in new names. Posted by Roderic D. M. Page. Possible project: A PubMed Central for taxonomy. Is do...

iphylo.blogspot.com

iPhylo: Automatically extracting possible taxonomic synonyms from the literature

http://iphylo.blogspot.com/2014/11/automatically-extracting-possible.html

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed. ISSN 2051-8188 View this blog in Magazine View. Sunday, November 23, 2014. Automatically extracting possible taxonomic synonyms from the literature. Quick notes on an experimental feature I've added to BioNames. For a parasite of the bottlenose dolphin. This name is a synonym of Synthesium tursionis. Joining these together we ca...

iphylo.blogspot.com

iPhylo: More Neo4J tests of GBIF taxonomy: Using IPNI to find objective synonyms

http://iphylo.blogspot.com/2015/08/more-neo4j-tests-of-gbif-taxonomy-using.html

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed. ISSN 2051-8188 View this blog in Magazine View. Sunday, August 09, 2015. More Neo4J tests of GBIF taxonomy: Using IPNI to find objective synonyms. Following on from Testing the GBIF taxonomy with the graph database Neo4J. Are synonyms, and hence only one of these should appear in the GBIF classification. This is an example t...

iphylo.blogspot.com

iPhylo: Guest post: Response to the discussion on Red List assessments of East African chameleons

http://iphylo.blogspot.com/2014/08/guest-post-response-to-discussion-on.html

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed. ISSN 2051-8188 View this blog in Magazine View. Tuesday, August 19, 2014. Guest post: Response to the discussion on Red List assessments of East African chameleons. This is guest post by Angelique Hjarding in response to discussion on this blog. About the paper below. We welcome further discussion as this is a very important top...

iphylo.blogspot.com

iPhylo: Modelling taxonomic names in databases

http://iphylo.blogspot.com/2015/07/modelling-taxonomic-names-in-databases.html

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed. ISSN 2051-8188 View this blog in Magazine View. Tuesday, July 28, 2015. Modelling taxonomic names in databases. Quick notes on modelling taxonomic names in databases, as part of an ongoing discussion elsewhere about this topic. One model that is widely used (e.g., ITIS. Separating names and taxa. Is the accepted name for a taxon...

iphylo.blogspot.com

iPhylo: The Biodiversity Data Journal is not machine readable

http://iphylo.blogspot.com/2015/07/the-biodiversity-data-journal-is-not.html

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed. ISSN 2051-8188 View this blog in Magazine View. Monday, July 27, 2015. The Biodiversity Data Journal is not machine readable. In my ( previous post. I discussed the potential for the Biodiversity Data Journal. The problem becomes apparent when you ask "what claims or assertions are the papers making? Here is another example:.

iphylo.blogspot.com

iPhylo: Possible project: #itaxonomist, combining taxonomic names, DOIs, and ORCID to measure taxonomic impact

http://iphylo.blogspot.com/2015/08/possible-project-itaxonomist-combining.html

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed. ISSN 2051-8188 View this blog in Magazine View. Sunday, August 09, 2015. Possible project: #itaxonomist, combining taxonomic names, DOIs, and ORCID to measure taxonomic impact. Imagine that this is run as a campaign (hashtag #itaxonomist), with regular announcements leading up to the release date. Imagine if #itaxonomist tre...

iphylo.blogspot.com

iPhylo: OpenURL and spiders

http://iphylo.blogspot.com/2007/05/openurl-and-spiders.html

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed. ISSN 2051-8188 View this blog in Magazine View. Monday, May 28, 2007. That approach just won't cut it anymore. Dan Chudnov, Rethinking OpenURL. Time to bring some threads together. I've been working on a tool to parse references and find existing identifiers. The tool is at http:/ bioguid.info/references. How do I link to the ot...

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bionames.org

BioNames

A database linking taxonomic names to their original descriptions, to taxa, and to phylogenies. See http:/ dx.doi.org/10.7717/peerj.190. For background, and About. The core of BioNames are the over 4 million animal names listed by the ION. Database. BioNames enhances these by linking (wherever possible) to the original description, so you can see the evidence for a name. Can be read directly in BioNames. BioNames includes phylogenies from the PhyLoTA. BioNames is being developed by Roderic D M Page.

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