biology.unm.edu
UNM Biology Adjunct Faculty
http://biology.unm.edu/faculty-adjunct.shtml
Biology Graduate Student Association. Biology In The News. Emeriti and Retired Faculty. Biology Graduate Student Association. Department Administration and Forms. UNM Biology, Castetter Hall 1480. MSC03-2020, 219 Yale Blvd NE. 1 University of New Mexico. Albuquerque, NM 87131-0001. Join / Leave UNMBio-L. Main Page Photo Credits. Member, as co-chairs of graduate student committees. Karl M. Johnson. MD, University of Rochester, 1956. PhD (Biophysics), University of California at Berkeley, 1972. Ecological ...
mmbios.org
MMBioS Software
http://www.mmbios.org/index.php/software
NIH Biomedical Technology and Research Resource (BTRR). Technology Research and Development. EAB Meeting Fall 2015. EAB Meeting Fall 2014. EAB Meeting Fall 2013. How to Acknowledge Us. The following software tools and services, developed by MMBioS partners, are freely available to the biomedical community. We ask that any publications resulting from their use include an acknowledgement. Elastic Network Models (ENM). CellBlender is a Blender addon for creation, simulation, visualization, and analysis of r...
ccbb.pitt.edu
Faeder Lab
http://ccbb.pitt.edu/Faculty/Faeder
My lab is interested in developing mathematical models of biological regulatory processes that integrate specific knowledge about protein-protein interactions. Together with collaborators at Los Alamos National Laboratory. We have developed a simulation framework called BioNetGen. That allows rule-based specification of biochemical reaction networks and provides both deterministic and stochastic modeling capabilities. Current research includes the development of specific models of signal transduction...
github.com
GitHub - RuleWorld/bionetgen: Rule-based modeling framework
https://github.com/RuleWorld/bionetgen
Use Git or checkout with SVN using the web URL. Aug 12, 2016. Fixed a small bug in how compartment name comparison was being done. The incorrect comparison operator was being used. This could expose some faults in the previous way that mapping was being done in compartmental rules, so watch out for validation failures on compartmental models. Failed to load latest commit information. You can't perform that action at this time. You signed in with another tab or window. Reload. To refresh your session.
ameyer.me
Author Post: On Why We Build Models · Ameyer.me
http://www.ameyer.me/data/2015/07/16/Gas6ms.html
Author Post: On Why We Build Models. The work from the final portion of my Ph.D. thesis is online today. A brand new journal from Cell Press. Though nascent, the journal has already published exciting studies on the geospatial distribution of bacteria in cities. Using CRISPR-Cas9 to rapidly engineer yeast metabolic pathways. And programming synthetic circuits in gut microbiota. In it, we use differential equation modeling to understand how AXL. Shou et. al. Very recently described it best:. We need bette...
sbase.sbml.org
Documents/FAQ - SBML.caltech.edu
http://sbase.sbml.org/Documents/FAQ
Parent pages: SBML.org. Date of last content update: 2015-1-20. This Frequently Asked Questions (FAQ) document answers to some frequent questions about the Systems Biology Markup Language (SBML). This is a non-normative document that does not define. Any aspect of SBML; rather, it is intended to provide additional information in an easily accessible and readable form. What is this FAQ? Who maintains this FAQ? General questions about SBML. What does SBML look like? It's too hard to read the XML. What is S...
sbml.org
Documents/FAQ - SBML.caltech.edu
http://sbml.org/Documents/FAQ
Parent pages: SBML.org. Date of last content update: 2015-1-20. This Frequently Asked Questions (FAQ) document answers to some frequent questions about the Systems Biology Markup Language (SBML). This is a non-normative document that does not define. Any aspect of SBML; rather, it is intended to provide additional information in an easily accessible and readable form. What is this FAQ? Who maintains this FAQ? General questions about SBML. What does SBML look like? It's too hard to read the XML. What is S...
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