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Reconstruction of a polymer model from the chromatin capture data. Reconstruct a polymer model directly from empirical chromatin conformation capture data and study the chromatin steady-state and transient properties. More. Statistics of randomly cross-linked polymer models to interpret chromatin conformation capture data. Analysis of two loci single particle trajectories and estimation of local chromatin reorganization following DSB. Super resolution single particle trajectories using stochastic analysis.

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Reconstruction of a polymer model from the chromatin capture data. Reconstruct a polymer model directly from empirical chromatin conformation capture data and study the chromatin steady-state and transient properties. More. Statistics of randomly cross-linked polymer models to interpret chromatin conformation capture data. Analysis of two loci single particle trajectories and estimation of local chromatin reorganization following DSB. Super resolution single particle trajectories using stochastic analysis.

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BioNewMetrics | The Quantitative Biology Project | bionewmetrics.org Reviews

https://bionewmetrics.org

Reconstruction of a polymer model from the chromatin capture data. Reconstruct a polymer model directly from empirical chromatin conformation capture data and study the chromatin steady-state and transient properties. More. Statistics of randomly cross-linked polymer models to interpret chromatin conformation capture data. Analysis of two loci single particle trajectories and estimation of local chromatin reorganization following DSB. Super resolution single particle trajectories using stochastic analysis.

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bionewmetrics.org

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Threshold activation for stochastic chemical reactions in microdomains | BioNewMetrics

http://bionewmetrics.org/threshold-activation-for-stochastic-chemical-reactions-in-microdomains

Threshold activation for stochastic chemical reactions in microdomains. We estimate here ( bar{ tau T} ) when the targets, all initially unbound, are distributed on the surface of a closed microdomain. The analytical and asymptotic results are in agreement with Brownian simulations. More precisely ( bar{ tau T} ) (for more details, see [1]) is given by [ bar{ tau T}= frac{1}{ lambda} sum {j=0} {T-1}( frac{k {-1} { lambda}) j sum {k=j} {T-1} frac{k! PRE 1, 81,2010. Designed by: Free WP Themes.

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Sensory Transduction | BioNewMetrics

http://bionewmetrics.org/transduction

Is process by which a chemical, pressure, light signal is transformed into a cellular response. Sensory cells or neurons face an extraordinary demand: they have to reliably detect and amplify a very weak signal (few molecules or one photon) while being also functional at very high intensities. To accomplish these tasks, different aspects are combined: cell structure and biophysical signaling cascades. Photoreceptors in the retina: cones (blue), rods (yellow). Designed by: Free WP Themes.

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Diffusion in crowded dendrites and estimation of calcium spread | BioNewMetrics

http://bionewmetrics.org/diffusion-in-crowded-dendrites-and-estimation-of-calcium-spread

Diffusion in crowded dendrites and estimation of calcium spread. Conclusion: We show that for moderate crowding, contrary to the diffusion of large objects, calcium dynamics is mainly restricted by buffer concentration and exchanger activity and not by obstacles or dendritic spines. Mathematical theory of diffusion in a crowded dendrite. Figure 2: Schematic representation of diffusion in a compartment. Estimation of crowding effects through fluorescein diffusion. Calcium simulations in crowded dendrites.

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Nuclear organization | BioNewMetrics

http://bionewmetrics.org/category/projects/nuclear-organization

Category Archives: Nuclear organization. No results were found for your request! BioNewMetrics provides advanced knowledge and computational methods based on mathematical analysis, physical modeling and numerical simulations for computational biology and Big data analysis. Designed by: Free WP Themes. Thanks to New WordPress Themes. And Premium WordPress Themes.

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Open Lectures | BioNewMetrics

http://bionewmetrics.org/open-lectures

Graduate and undergraduate Lectures in applied mathematics, computational biology, mathematical neuroscience, system biology, numerical simulations, data analysis of large data, image processing . Stochastic processes, Brownian motion, partial differential equations, numerical methods, Matlab/Maple/ Matematica codes. Diffusion, Mean First Passage Time methods, Markov chains, Narrow Escape Time, Asymptotic methods,conformal methods, WKB expansion, boundary layer analysis. BioNewMetrics provides advanced k...

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BioNewMetrics | The Quantitative Biology Project

Reconstruction of a polymer model from the chromatin capture data. Reconstruct a polymer model directly from empirical chromatin conformation capture data and study the chromatin steady-state and transient properties. More. Statistics of randomly cross-linked polymer models to interpret chromatin conformation capture data. Analysis of two loci single particle trajectories and estimation of local chromatin reorganization following DSB. Super resolution single particle trajectories using stochastic analysis.

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