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BioPHP. PHP for bioinformatics

BioPHP. PHP for bioinformatics

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BioPHP. PHP for bioinformatics | biophp.org Reviews

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BioPHP. PHP for bioinformatics

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1

BioPHP - Funtions

http://www.biophp.org/resources.php?mode=functions

Alignment of two DNA sequences. Smith-Waterman alignment method is used. alignment of proteins. Alignment of two protein sequences. Smith-Waterman alignment method is used. basic tm. Basic melting (Tm) temperature foroligonucleotides chemgrp protein. Translates peptide sequence to checmical groups. Chemical groups/aminoacids: L/GAVLI H/ST M/NQ R/FYW S/CM I/P A/DE C/KRH */* X/X complement. Gets the genetic complement of a DNA or RNA sequence. count codons dna or rna. Searches for palindromic sequences wit...

2

BioPHP - Restriction Enzyme Class

http://www.biophp.org/GenePHP/resten_class

BioPHP - Restriction Enzyme Class. Original code submitted by joseba. Code bellow is covered by GNU GPL v2. Last change: 2010/10/18 21:01 Recent Changes. Short for Restriction Enzyme ) Contains code for the RestEn Class. Last change: 2010/10/18 21:01 Recent Changes.

3

BioPHP - Find Palindromic sequences

http://www.biophp.org/minitools/find_palindromes

BioPHP - Find Palindromic sequences. Original code submitted by joseba. Code bellow is covered by GNU GPL v2. Last change: 2011/04/27 11:01 Recent Changes. Will search the sequence to find palindromic subsequences. Allows selection of minimum and maximum size of palindromic subsequences. Last change: 2011/04/27 11:01 Recent Changes. Title: Find Palindrome Script Author: Joseba Bikandi License: GNU GLP v2 -! Print $ SERVER[PHP SELF];?

4

BioPHP Wiki - Info

http://www.biophp.org/info.html

Our panel of selected developers. Biophp.org: the start. Is a type of website that allows users to add and edit content and is especially suited for constructive collaborative authoring. BioPHP uses a Wiki service to allow this kind of collaboration, so that PHP code for biocomputing may be developed. As edition of PHP code may easily generated errors, only registered users. Before editing and changing a code project, please try its functionality in a website. Those will be multipage scripts, scripts wit...

5

DNA sequence manipulation

http://www.biophp.org/minitools/sequence_manipulation_and_data/demo.php

Remove no coding characters. Reverse and Complement of sequence. Select subsequence from position. Non-coding characters will be removed by default, and X is replaced by N. Codes are used as a reference. Source code is available at BioPHP.org.

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totoharyanto.staff.ipb.ac.id totoharyanto.staff.ipb.ac.id

Publikasi | TOTO HARYANTO

http://totoharyanto.staff.ipb.ac.id/publikasi

Sedikit goresan menebar manfaat . Sholat Subuh Berjamaah Berenam. Bulughul Marom (Ibnu Utsaimin). Syaikh Abu Bakar Asyatiri. Sheikh Abdurrahman As Sudais. KAUST: إن شاء الله. Haryanto T, Kurniawan R, Muhammad S. 2015. Protein Family Identification using Markov Chain as Feature Extraction and Probabilistic Neural Network (PNN) as Classifier. 2015 International Conference on Information, Communication Technology and System (ICTS). ISBN : 978-1-5090-0095-1. Puspita Sari D, T. Haryanto. Rahmi S, T. H Rijzaan...

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About IPB | TOTO HARYANTO

http://totoharyanto.staff.ipb.ac.id/tentang-ipb

Sedikit goresan menebar manfaat . Sholat Subuh Berjamaah Berenam. Bulughul Marom (Ibnu Utsaimin). Syaikh Abu Bakar Asyatiri. Sheikh Abdurrahman As Sudais. KAUST: إن شاء الله. Tinggalkan komentar Cancel reply. Your email address will not be published. Required fields are marked *. Database Struktur Sekunder Protein. Dept Geofisika dan Metereologi. Departemen Ilmu Komputer IPB. Pusat Data dan Informasi IPB. Al Qur'an Web. Pak Anto S Nugroho. Pak Arief B. Witarto. Pengunjung Hari Ini: 25.

totoharyanto.staff.ipb.ac.id totoharyanto.staff.ipb.ac.id

Pengajaran | TOTO HARYANTO

http://totoharyanto.staff.ipb.ac.id/pengajaran

Sedikit goresan menebar manfaat . Sholat Subuh Berjamaah Berenam. Bulughul Marom (Ibnu Utsaimin). Syaikh Abu Bakar Asyatiri. Sheikh Abdurrahman As Sudais. KAUST: إن شاء الله. Berikut beberapa Mata Kuliah yang pernah saya berikan satu tahun terakhir:. Mata kuliah ini berisikan tentang sejarah perkembangan komputer, perangkat lunak, perangkat keras serta beberapa infrastruktur jaringan komputer. B Algoritma dan Pemrograman. Tinggalkan komentar Cancel reply. Your email address will not be published. On Cert...

totoharyanto.staff.ipb.ac.id totoharyanto.staff.ipb.ac.id

Ta'lim Online | TOTO HARYANTO

http://totoharyanto.staff.ipb.ac.id/ad-dien/talim-online

Sedikit goresan menebar manfaat . Sholat Subuh Berjamaah Berenam. Bulughul Marom (Ibnu Utsaimin). Syaikh Abu Bakar Asyatiri. Sheikh Abdurrahman As Sudais. KAUST: إن شاء الله. Syaikh Muhammad bin Sholeh Al Utsaimin. Youtube=http:/ www.youtube.com/watch? Tinggalkan komentar Cancel reply. Your email address will not be published. Required fields are marked *. Database Struktur Sekunder Protein. Dept Geofisika dan Metereologi. Departemen Ilmu Komputer IPB. Pusat Data dan Informasi IPB. Al Qur'an Web.

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Matrikulasi | TOTO HARYANTO

http://totoharyanto.staff.ipb.ac.id/pengajaran/matrikulasi

Sedikit goresan menebar manfaat . Sholat Subuh Berjamaah Berenam. Bulughul Marom (Ibnu Utsaimin). Syaikh Abu Bakar Asyatiri. Sheikh Abdurrahman As Sudais. KAUST: إن شاء الله. Tinggalkan komentar Cancel reply. Your email address will not be published. Required fields are marked *. Database Struktur Sekunder Protein. Dept Geofisika dan Metereologi. Departemen Ilmu Komputer IPB. Pusat Data dan Informasi IPB. Al Qur'an Web. Pak Anto S Nugroho. Pak Arief B. Witarto. Pengunjung Hari Ini: 25.

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Pengenalan Pola | TOTO HARYANTO

http://totoharyanto.staff.ipb.ac.id/pengajaran/pengenalan-pola

Sedikit goresan menebar manfaat . Sholat Subuh Berjamaah Berenam. Bulughul Marom (Ibnu Utsaimin). Syaikh Abu Bakar Asyatiri. Sheikh Abdurrahman As Sudais. KAUST: إن شاء الله. Tinggalkan komentar Cancel reply. Your email address will not be published. Required fields are marked *. Database Struktur Sekunder Protein. Dept Geofisika dan Metereologi. Departemen Ilmu Komputer IPB. Pusat Data dan Informasi IPB. Al Qur'an Web. Pak Anto S Nugroho. Pak Arief B. Witarto. Pengunjung Hari Ini: 25.

totoharyanto.staff.ipb.ac.id totoharyanto.staff.ipb.ac.id

CV | TOTO HARYANTO

http://totoharyanto.staff.ipb.ac.id/tentang-saya-2

Sedikit goresan menebar manfaat . Sholat Subuh Berjamaah Berenam. Bulughul Marom (Ibnu Utsaimin). Syaikh Abu Bakar Asyatiri. Sheikh Abdurrahman As Sudais. KAUST: إن شاء الله. Nama : Toto Haryanto. Tempat tgl. Lahir : Indramayu, 17 November 1982. Pekerjaan : Dosen dan Peneliti. Alamat Rumah : Villa Bogor Indah 3 Blok BD 3 Nomor 1. Kel. Kedung Halang. Kec Bogor Utara – Kota Bogor. No Handphone : 628567332055. Email : totoharyanto@ipb.ac.id. And totoharyanto@apps.ipb.ac.id. Departemen Ilmu Kompter FMIPA IPB.

totoharyanto.staff.ipb.ac.id totoharyanto.staff.ipb.ac.id

MetKuan | TOTO HARYANTO

http://totoharyanto.staff.ipb.ac.id/pengajaran/metkuan

Sedikit goresan menebar manfaat . Sholat Subuh Berjamaah Berenam. Bulughul Marom (Ibnu Utsaimin). Syaikh Abu Bakar Asyatiri. Sheikh Abdurrahman As Sudais. KAUST: إن شاء الله. LKP 4 – Fuzzy Logic. LKP 6 – K Means. LKP 8 – PCA and. LKP-9 – Perceptron. Data untuk Soal SOM. Tinggalkan komentar Cancel reply. Your email address will not be published. Required fields are marked *. Database Struktur Sekunder Protein. Dept Geofisika dan Metereologi. Departemen Ilmu Komputer IPB. Pusat Data dan Informasi IPB.

totoharyanto.staff.ipb.ac.id totoharyanto.staff.ipb.ac.id

Foto Ilkom Dramaga | TOTO HARYANTO

http://totoharyanto.staff.ipb.ac.id/galeri

Sedikit goresan menebar manfaat . Sholat Subuh Berjamaah Berenam. Bulughul Marom (Ibnu Utsaimin). Syaikh Abu Bakar Asyatiri. Sheikh Abdurrahman As Sudais. KAUST: إن شاء الله. Tinggalkan komentar Cancel reply. Your email address will not be published. Required fields are marked *. Database Struktur Sekunder Protein. Dept Geofisika dan Metereologi. Departemen Ilmu Komputer IPB. Pusat Data dan Informasi IPB. Al Qur'an Web. Pak Anto S Nugroho. Pak Arief B. Witarto. Pengunjung Hari Ini: 25.

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BioPHP. PHP for bioinformatics

The aim of this site is to share knowledge by using a Wiki-like service: classes, functions. And minitools may be edited by registered users. More info here. Download all minitools (.zip). Sequence manipulation and data. Melting Temperature (Tm) Calculator. Alignment of DNA/Protein sequences. Restriction digest of DNA. Microarray analysis: adaptive quantification. Reduced alphabets for proteins. GC-, AT-, KETO- and oligo-skews generator. Oligonucleotides for distance among sequences.

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