cellbiol.com
Python CGI Scripts for Molecular Biology and Bioinformatics
http://www.cellbiol.com/python_cgi_scripts_bioinformatics.php
The Bio-Web: Molecular and Cell Biology and Bioinformatics news, tools, books, resources and web applications development. Side navigation menus - Biology. Online Sequence Analysis Resources. Sequence Manipulation Suite 2 - SMS. Basic Sequence Manipulation Tools. Life Sciences Education Resources. Molecular Biology Software Downloads. Python CGI Scripts for Bioinformatics. Bioinformatics Web Development Course. Work is in progress! Internet, Networks and TCP/IP. 1-1: Data Transmission on the Internet.
stothard.afns.ualberta.ca
Stothard Research Group
http://stothard.afns.ualberta.ca/public_html/links.html
Integrative Genomics Viewer (IGV). Microbial Ecology and Metagenomics. Gene Association and QTL Mapping. Red Hat Linux manuals. Victoria, British Columbia. London, United Kingdom. Seoul, South Korea. University of Alberta (Google Maps). University of Alberta (PDF). Edmonton International Airport (Google Maps). Victoria, BC (Google Maps). Valid XHTML 1.0 Strict. Last updated: July 18, 2016.
github.com
GitHub - etal/cnvkit: Copy number variant detection from targeted DNA sequencing
https://github.com/etal/cnvkit
Copy number variant detection from targeted DNA sequencing. Http:/ cnvkit.readthedocs.org. Use Git or checkout with SVN using the web URL. Aug 24, 2016. Resurrect cnn updater.py script. Failed to load latest commit information. Cnary: privatize the method guess average depth. Aug 24, 2016. Data: GRCh37 mitochondrial chromosome is named "MT", not "M". Mar 21, 2016. Use conda travis env grid for CI (. May 16, 2016. Doc: start FAQ at end of quickstart page. Jul 19, 2016. Apr 27, 2016. Jul 17, 2014. Report s...
severalog.blogspot.com
severalog
http://severalog.blogspot.com/2015/02/i-was-getting-ready-to-write-something.html
Thursday, February 19, 2015. I was getting ready to write something* to replace Biopython's. SwissProt module today as it can't parse Uniprot entries yet. Just as I was starting to do so, I found BioServices. One caveat: the Uniprot search function. Is billed as "a bit unstable". I haven't been able to get it to complete any searches successfully. BioServices may be more useful if a list of accession IDs is already available, though that defeats the purpose for me. And in the end, I wrote it myself anyway.
enthought.com
Scientific and Analytic Python Package Index | Enthought Canopy
https://www.enthought.com/products/canopy/package-index
Some functionality is disabled due to your browser configuration. PyXLL (Python for Excel). Download Free PyXLL Trial. Python for LabVIEW Users. Python Integration Toolkit for LabVIEW. Oil and Gas Software. Enthought Python Distribution (EPD). Enthought Tool Suite (ETS). Online Training on Demand. Training on Demand Website. Try/Buy Training on Demand. Python for Data Science. Pandas Master Class: Data Analysis in Python. Python for Scientists, Analysts and Engineers. Concurrency and Parallelism in Python.
gatc.ca
Applet Deployment Using PyJ2D
http://gatc.ca/2012/02/08/applet-deployment-using-pyj2d
Pyjsdl: Python-to-JavaScript Module ». Applet Deployment Using PyJ2D. Module permits scripts coded in Python. Programming language and the Pygame. Module to run in the Java virtual machine (JVM) using the Jython. Interpreter. PyJ2D wraps several Java libraries including the Java 2D graphics library to emulate Pygame functionality. Information about PyJ2D can be obtained on the PyJ2D project page. And the PyJ2D: Python-Java2D Applet post. I have used PyJ2D to create some applets. Alternatively, Java can r...
chempython.org
ChemPython.org: ChemPython Links
http://www.chempython.org/applications.html
Here is our growing directory of software for chemical/pharmaceutical applications that can integrate with the open-source scripting language Python. If you have suggestions or additions, please contact us at: info@chempython.org. Python wrappers for OElib. Molecular Modelling Tool Kit MMTK. Class Library for Advanced Molecular Properties. Python Molecular Viewer PMV. Interfaces to relational databases. Visualization Tool Kit (VTK). Tools drivable from Python via COM.
crdd.osdd.net
Docking
http://crdd.osdd.net/dqsar.php
Data on M.tb. Docking is an in silico technique of determining the molecular structure of complexes formed by two or more molecules without the need for experimental measurement. With the rapid increase in available structures biomolecules, this technique can be exploited to model complexes of biological interest. Docking is an invaluable tool for drug designing. Computational resources of this area have been classified in following categories:. Predict binding modes of small molecule-protein complexes.
biskit.pasteur.fr
Short instruction — Biskit: python for structural bioinformatics
http://biskit.pasteur.fr/install/short
Only in current section. Mac OS X installation. Cookies are not enabled. You must enable cookies before you can log in. Well, kind of short. These instructions should cover most cases. Complete step-by-step instructions for a manual installation of Biskit and it's dependencies from source is described here: Install dependencies. This should rarely be needed any longer. But refer to that page if you get stuck with any of the steps below. For the impatient, the following should work:. Wget https:/ github&#...
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