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Bioscript

Saturday, June 2, 2007. Primer Designing on Metallothionein. The algorithm automates the primer length according to the gene range, and algorithm calculates an overall presence of all the nucleotides in the given primer by which the program calculates the GC% of the given gene. If ‘n’ were the length of the primer, GC% is calculated by the formula. GC %=[( G C)/n]*100. Since the value of both GC and AT is known using the calculation of temperature for the primer using the formula is. Tm=2(A T) 4(G C).

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Saturday, June 2, 2007. Primer Designing on Metallothionein. The algorithm automates the primer length according to the gene range, and algorithm calculates an overall presence of all the nucleotides in the given primer by which the program calculates the GC% of the given gene. If ‘n’ were the length of the primer, GC% is calculated by the formula. GC %=[( G C)/n]*100. Since the value of both GC and AT is known using the calculation of temperature for the primer using the formula is. Tm=2(A T) 4(G C).

<META> KEYWORDS

1 bioscript

2 download

3 posted by julian

4 1 comments

5 bioperl scripts

6 usr/bin/perl

7 my $filename =

8 chomp $filename;

9 unless e $filename {

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bioscript,download,posted by julian,1 comments,bioperl scripts,usr/bin/perl,my $filename =,chomp $filename;,unless e $filename {,exit;,print press,to exit ;,parsepdbrecordtypes,sub parsepdbrecordtypes {,use strict;,use warnings;,else{,return %recordtypes;

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Saturday, June 2, 2007. Primer Designing on Metallothionein. The algorithm automates the primer length according to the gene range, and algorithm calculates an overall presence of all the nucleotides in the given primer by which the program calculates the GC% of the given gene. If ‘n’ were the length of the primer, GC% is calculated by the formula. GC %=[( G C)/n]*100. Since the value of both GC and AT is known using the calculation of temperature for the primer using the formula is. Tm=2(A T) 4(G C).

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Bioscript: Bioperl Scripts

http://bioscript.blogspot.com/2007/05/bioperl-scripts.html

Friday, May 4, 2007. Extract sequence chains from PDB file. Read in PDB file: Warning - some files are very large! Print "Enter Pdb file name, n";. Print "$filename does not exist! My @file = get file data($filename);. Parse the record types of the PDB file. My %recordtypes = parsePDBrecordtypes(@file);. Extract the amino acid sequences of all chains in the protein. My @chains = extractSEQRES( $recordtypes{'SEQRES'} );. Translate the 3-character codes to 1-character codes, and print. Print "$chain n";.

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Saturday, June 2, 2007. Primer Designing on Metallothionein. The algorithm automates the primer length according to the gene range, and algorithm calculates an overall presence of all the nucleotides in the given primer by which the program calculates the GC% of the given gene. If ‘n’ were the length of the primer, GC% is calculated by the formula. GC %=[( G C)/n]*100. Since the value of both GC and AT is known using the calculation of temperature for the primer using the formula is. Tm=2(A T) 4(G C).

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