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BioSmalltalk

Usage and developement comments about the BioSmalltalk project. Friday, March 20, 2015. BioSmalltalk now available through GitHub. I have created the BioSmalltalk repository. In GitHub so you can clone and contribute from there. I hope this will make it easy for interested parties to contribute to this code or to specialize it to their own needs. Regular distributions will still be made at Google Code. For now) but if you want the absolute latest changes, GitHub will be the place to go. From the UMD, Cen...

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BioSmalltalk | biosmalltalk.blogspot.com Reviews

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Usage and developement comments about the BioSmalltalk project. Friday, March 20, 2015. BioSmalltalk now available through GitHub. I have created the BioSmalltalk repository. In GitHub so you can clone and contribute from there. I hope this will make it easy for interested parties to contribute to this code or to specialize it to their own needs. Regular distributions will still be made at Google Code. For now) but if you want the absolute latest changes, GitHub will be the place to go. From the UMD, Cen...

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BioSmalltalk | biosmalltalk.blogspot.com Reviews

https://biosmalltalk.blogspot.com

Usage and developement comments about the BioSmalltalk project. Friday, March 20, 2015. BioSmalltalk now available through GitHub. I have created the BioSmalltalk repository. In GitHub so you can clone and contribute from there. I hope this will make it easy for interested parties to contribute to this code or to specialize it to their own needs. Regular distributions will still be made at Google Code. For now) but if you want the absolute latest changes, GitHub will be the place to go. From the UMD, Cen...

INTERNAL PAGES

biosmalltalk.blogspot.com

1

BioSmalltalk now available through GitHub ~ BioSmalltalk

http://www.biosmalltalk.blogspot.com/2015/03/biosmalltalk-now-available-through.html

Usage and development comments about the BioSmalltalk project. Friday, March 20, 2015. BioSmalltalk now available through GitHub. I have created the BioSmalltalk repository. In GitHub so you can clone and contribute from there. I hope this will make it easy for interested parties to contribute to this code or to specialize it to their own needs. Regular distributions will still be made at Google Code. For now) but if you want the absolute latest changes, GitHub will be the place to go. Lets write plain S...

2

February 2012 ~ BioSmalltalk

http://www.biosmalltalk.blogspot.com/2012_02_01_archive.html

Usage and development comments about the BioSmalltalk project. Thursday, February 16, 2012. Exploring interactively a BLAST XML alignment. Suppose you want to explore interactively the result of a BLAST alignment. If you have exported the XML format from the NCBI site, you may load it in BioSmalltalk into a BioNCBIBlastReader object, and open an explorer window to send messages to this object. NewFromXML: 'Data BLASTs YT817301R-Alignment.xml'. Self blastDbName " - 'nr' ". Self blastQueryLength " - '923'".

3

Download a human chromosome in one line of code ~ BioSmalltalk

http://www.biosmalltalk.blogspot.com/2014/12/download-human-chromosome-in-one-line.html

Usage and development comments about the BioSmalltalk project. Monday, December 22, 2014. Download a human chromosome in one line of code. Let's write plain Smalltalk code to download the Human chromosome 22 FASTA from the NCBI servers (about 9,6 Mbytes gzip compressed). That seems a lot of typing for a Bioinformatics library and Smalltalk tradition. That's why I wrote a Genome Downloader. Class which makes really easy to download the latest build:. BioHSapiensGD new downloadChromosome: 22. Contents of t...

4

March 2015 ~ BioSmalltalk

http://www.biosmalltalk.blogspot.com/2015_03_01_archive.html

Usage and development comments about the BioSmalltalk project. Friday, March 20, 2015. BioSmalltalk now available through GitHub. I have created the BioSmalltalk repository. In GitHub so you can clone and contribute from there. I hope this will make it easy for interested parties to contribute to this code or to specialize it to their own needs. Regular distributions will still be made at Google Code. For now) but if you want the absolute latest changes, GitHub will be the place to go. Lets write plain S...

5

January 2012 ~ BioSmalltalk

http://www.biosmalltalk.blogspot.com/2012_01_01_archive.html

Usage and development comments about the BioSmalltalk project. Friday, January 6, 2012. Basic sequence manipulation with BioSmalltalk. To obtain the aminoacid name you just send #asAminoacidName to a String, for example. A' asAminoacidName. " - 'Alanine' ". G'asAminoacidName. " - 'Glycine' ". Many times we copy and paste sequences from several sources which aren't properly formatted , so to remove all spacing characters from a sequence you could use:. Atcggtcggctta' hasAmbiguousDNABases. " - false ".

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planet.smalltalk.org

Planet Smalltalk

http://planet.smalltalk.org/60

David A. Smith. Diego G. Deck. Esteban A. Maringolo. Holger Hans Peter Freyther. Holger Hans Peter Freyther. JR's Smalltalk 4 You. Jan van de Sandt. José A. Ortega-Ruiz. Michael van der Gulik. Planet Smalltalk is a meta blog collecting the content of various Smalltalk-related blogs. It doesn't provide any content of its own. Smalltalk-related blogs are always welcome at: Coen De Roover. August 29, 2016 10:03 PM. Planet Smalltalk is hosted on a server of the Software Languges Lab. August 29, 2016. To do t...

planet.smalltalk.org

Planet Smalltalk

http://planet.smalltalk.org/24

David A. Smith. Diego G. Deck. Esteban A. Maringolo. Holger Hans Peter Freyther. Holger Hans Peter Freyther. JR's Smalltalk 4 You. Jan van de Sandt. José A. Ortega-Ruiz. Michael van der Gulik. Planet Smalltalk is a meta blog collecting the content of various Smalltalk-related blogs. It doesn't provide any content of its own. Smalltalk-related blogs are always welcome at: Coen De Roover. August 31, 2016 10:03 AM. Planet Smalltalk is hosted on a server of the Software Languges Lab. August 30, 2016. I did n...

planet.smalltalk.org

Planet Smalltalk

http://planet.smalltalk.org/48

David A. Smith. Diego G. Deck. Esteban A. Maringolo. Holger Hans Peter Freyther. Holger Hans Peter Freyther. JR's Smalltalk 4 You. Jan van de Sandt. José A. Ortega-Ruiz. Michael van der Gulik. Planet Smalltalk is a meta blog collecting the content of various Smalltalk-related blogs. It doesn't provide any content of its own. Smalltalk-related blogs are always welcome at: Coen De Roover. August 30, 2016 10:03 AM. Planet Smalltalk is hosted on a server of the Software Languges Lab. August 30, 2016. I did n...

planet.smalltalk.org

Planet Smalltalk

http://planet.smalltalk.org/12

David A. Smith. Diego G. Deck. Esteban A. Maringolo. Holger Hans Peter Freyther. Holger Hans Peter Freyther. JR's Smalltalk 4 You. Jan van de Sandt. José A. Ortega-Ruiz. Michael van der Gulik. Planet Smalltalk is a meta blog collecting the content of various Smalltalk-related blogs. It doesn't provide any content of its own. Smalltalk-related blogs are always welcome at: Coen De Roover. August 31, 2016 10:03 PM. Planet Smalltalk is hosted on a server of the Software Languges Lab. August 31, 2016. I did n...

planet.smalltalk.org

Planet Smalltalk

http://planet.smalltalk.org/36

David A. Smith. Diego G. Deck. Esteban A. Maringolo. Holger Hans Peter Freyther. Holger Hans Peter Freyther. JR's Smalltalk 4 You. Jan van de Sandt. José A. Ortega-Ruiz. Michael van der Gulik. Planet Smalltalk is a meta blog collecting the content of various Smalltalk-related blogs. It doesn't provide any content of its own. Smalltalk-related blogs are always welcome at: Coen De Roover. August 30, 2016 10:03 PM. Planet Smalltalk is hosted on a server of the Software Languges Lab. August 30, 2016. I did n...

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Usage and developement comments about the BioSmalltalk project. Friday, March 20, 2015. BioSmalltalk now available through GitHub. I have created the BioSmalltalk repository. In GitHub so you can clone and contribute from there. I hope this will make it easy for interested parties to contribute to this code or to specialize it to their own needs. Regular distributions will still be made at Google Code. For now) but if you want the absolute latest changes, GitHub will be the place to go. From the UMD, Cen...

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