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BioTapestryBioTapestry is an interactive tool for building, visualizing, and simulating genetic regulatory networks.
http://www.biotapestry.org/
BioTapestry is an interactive tool for building, visualizing, and simulating genetic regulatory networks.
http://www.biotapestry.org/
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BioTapestry | biotapestry.org Reviews
https://biotapestry.org
BioTapestry is an interactive tool for building, visualizing, and simulating genetic regulatory networks.
BioTapestry.org GRN Repository
Quick Start User Guide. Welcome to the BioTapestry Model web server. This server displays Gene Regulatory Network models using the BioTapestry Web Viewer client. More information about the BioTapestry Web Client can be found here. Pancreas Genome Regulatory Network. T-cell Developmental Gene Network, 2011. T-cell Developmental Gene Network, 2009. Environment-specific gene regulatory networks for Mycobacterium tuberculosis. Environment And Gene Regulatory Influence Network). Last updated: January 21, 2016.
biotapestry.org
BioTapestry Quick Start Tutorial
http://www.biotapestry.org/quickStart/QuickStartRevA.html
BioTapestry Quick Start Tutorial. Revision A: released 9/28/07. The topics being covered here are:. FAQ, Shortcuts, and Getting the Tutorial Model. Drawing the Top-Level Model: Genes and Nodes. Drawing the Top-Level Model: Links. Creating a Hierarchy of Models. Populating the Top-Level Submodel. Populating the Lowest-Level Submodels. FAQ, Shortcuts, and Getting the Tutorial Model Back to Top. To start the tutorial. How do I draw links? Section of the tutorial teaches the basics of drawing links. Selected...
BioTapestry Tutorial: Using and Creating Paths
http://www.biotapestry.org/tutorials/paths/PathsTutorial.html
BioTapestry Tutorial: Using and Creating Paths. Version A: released 10/16/07. Adding Stops to the Path. Note: This version of the BioTapestry Tutorial on Using and Creating Paths. Shows reduced-size screen shots. You can click on any image and see the full-size image in a separate window. To get the version with full-size images, go here. Introduction Back to Top. Over hours 1 to 6. Since the genes in Region A. Click on Image to see Full Size. Getting Started Back to Top. How you save files at a URL depe...
BioTapestry: Version 7.0 Release Notes
http://www.biotapestry.org/docs/V7ReleaseNotes.html
William Longabaugh and Hamid Bolouri, Institute for Systems Biology. Davidson Lab, California Institute of Technology. Back to BioTapestry Home Page. Release Notes for Version 7.0.0. Version 7.0.0 was released on 09/22/14, and it includes several new features outlined below. New In-Browser BioTapestry Viewer Web Application. This goal has required a major redesign of the software architecture of BioTapestry. Yet the software continues to support the traditional desktop Java Editor application, and so...
BioTapestry: Archived Executables
http://www.biotapestry.org/docs/archivedExecutables.html
William Longabaugh and Hamid Bolouri, Institute for Systems Biology. Davidson Lab, California Institute of Technology. Back to BioTapestry Home Page. List of Archived Executables. These are the archived executable files for previous versions of BioTapestry:. Version 5.0.3 (Released 09/06/12) for Windows. Version 5.0.3 (Released 09/06/12) for Mac. Version 5.0.3 (Released 09/06/12) for Linux. Version 6.0.0 (Released 12/17/12) for Windows. Version 6.0.0 (Released 12/17/12) for Mac.
BioTapestry: Obsolete Documentation
http://www.biotapestry.org/docs/obsoleteDocs.html
William Longabaugh and Hamid Bolouri, Institute for Systems Biology. Davidson Lab, California Institute of Technology. Back to BioTapestry Home Page. List of Obsolete Documentation. The documentation listed below is obsolete; it is based upon BioTapestry Version 1. Original PDF BioTapestry Tutorial (Revision C: July 12, 2005). Time Course Data File for Original Tutorial. Temporal Input Data File for Original Tutorial. Completed BioTapestry Original Tutorial Network Model (Built by drawing).
TOTAL PAGES IN THIS WEBSITE
8
Drosophila Wing Development
http://drake.systemsbiology.net/DW
Click for larger version). This model is a supplement to the following paper:. Paul, L., Wang, S.-H., Manivannan, S.N., Bonanno, L., Lewis, S., Austin, C.L., Simcox, A. Dpp-induced Egfr signaling triggers postembryonic wing development in Drosophila. Proc Natl. Acad. Sci. USA 110(13): 5058 5063, 2013. NOTE: See Figure S3 in supplemental materials.). Launches the BioTapestry Web Viewer Client. The BioTapestry Web Client 'Quick Start' guide can be found here. Last updated: April 29, 2015.
Pancrease GRN
http://drake.systemsbiology.net/PancreasGRN
Click for larger version). This model is from the following book:. Peter, Isabelle S. and Davidson, Eric H. Genomic Control Process: Development and Evolution. Massachusetts: Academic Press, January 2015. Launches the BioTapestry Web Viewer Client. The BioTapestry Web Client 'Quick Start' guide can be found here. Last updated: January 21, 2016.
Endomesoderm & Ectoderm Models
http://sugp.caltech.edu/endomes/index.html
BioTapestry Interactive Network Viewer. About The BioTapestry Editor. BioTapestry Viewer "Quick Start" User's Guide. Endomesoderm Specification 21 to 30 Hours: View From All Nuclei. PMC Specification 6 to 30 Hours: View From All Nuclei. Endomesoderm Specification 6 to 18 Hours: View From All Nuclei. Endomesoderm QPCR Data Tables. BioTapestry Interactive Network Viewer For Ectoderm. Mesomere Lineages Network 6 to 17 Hours: View From All Nuclei. Oral Ectoderm Network 18 to 30 Hours: View From All Nuclei.
Pigment Cell Gene Resource:Gene Function
http://research.nhgri.nih.gov/pigment_cell/templates/files/Diagram.shtml
Enter word(s) to search. The Extramural Research Program. Education and Training Funding. Extramural Research News Features. Funded Programs and Projects. The Division of Intramural Research (DIR). Online NHGRI Research Resources. Publications, Books and Resources. For Patients and the Public:. Community Engagement and Community Health Resources. Finding Reliable Health Information Online. Genetic and Genomic Science and Research. Genetic and Rare Diseases Information Center (GARD). How to Contact Us.
BioTapestry.org · GitHub
https://github.com/BioTapestry
Http:/ www.BioTapestry.org/. Source for Web Server Installation. Sep 23, 2014. Current BioTapestry production source code release. Sep 22, 2014. This organization has no public members. You must be a member to see who’s a part of this organization. You can't perform that action at this time. You signed in with another tab or window. Reload. To refresh your session. You signed out in another tab or window. Reload. To refresh your session.
Shmulevich Group Software Tools
http://xerad.systemsbiology.net/index.html
Shmulevich Group, Institute for Systems Biology. Dizzy: a chemical kinetics stochastic simulation software package written in Java. ISBJava: a Java library for computational biology. BioTapestry: network visualization, documentation, and dissemination. BioTapestry is developed in collaboration with the laboratory of Eric Davidson at Caltech. Pointillist: an iterative framework for biological modeling. Please e-mail comments or corrections regarding this document to:. Last update: 17th August 2007.
Zebrafish
http://drake.systemsbiology.net/Zf
Zebrafish Embryo Developmental Gene Regulatory Network. Click for larger version). This model is a supplement to the following paper:. Chan TM, Longabaugh W, Bolouri H, Chen HL, Tseng WF, Chao CH, Jang TH, Lin YI, Hung SC, Wang HD, Yuh CH. Developmental gene regulatory networks in the zebrafish embryo. Biochim Biophys Acta 2009 Apr;1789(4):279-98. Doi: 10.1016/j.bbagrm.2008.09.005. Epub 2008 Oct 8. Launches the BioTapestry Web Viewer Client. For the genes in this model. Last updated: January 21, 2015.
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BioTapestry
September 24, 2017:. New Version 7.1.1 has been released. See What's New. BioTapestry is an interactive tool for building, visualizing, and sharing gene regulatory network models over the web. The latest version of the BioTapestry Editor is version 7.1.1, released 9/24/17. Download the copy of BioTapestry that is appropriate for your system. For Windows and Linux, you will need to install Java first. It can be downloaded from here. Click the "Free Java Download" button) or here. This large (75 MB) file c...
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