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BioTools @ UMass Medical School. Mon, Mar 19. Welcome to the Biotools site at the University of Massachusetts Medical School. Restriction and Pattern Analysis. Transcription Factor Site Scan. Signal Sequence Cleavage Tool. PRINTS protein motifs scan. NAR Database Summary Paper. Online Genetics Resources (NHGRI). VIPR - VIrus Pathogen Resource. PATRIC: Pathosystems Resource Integration Center. The CELL: An Image Library. HSLS Online:Bioinformatics Resource Collection. OregAnno- Regulatory Annotation DB.

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BioTools @ UMass Medical School. Mon, Mar 19. Welcome to the Biotools site at the University of Massachusetts Medical School. Restriction and Pattern Analysis. Transcription Factor Site Scan. Signal Sequence Cleavage Tool. PRINTS protein motifs scan. NAR Database Summary Paper. Online Genetics Resources (NHGRI). VIPR - VIrus Pathogen Resource. PATRIC: Pathosystems Resource Integration Center. The CELL: An Image Library. HSLS Online:Bioinformatics Resource Collection. OregAnno- Regulatory Annotation DB.

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1 is research computing

2 biotools main

3 news

4 resources

5 restriction mapping tool

6 rebase query tool

7 dna sequence analysis

8 orf plotting tool

9 primer3plus new version

10 primer3 new version

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BioTools Main | biotools.umassmed.edu Reviews

https://biotools.umassmed.edu

BioTools @ UMass Medical School. Mon, Mar 19. Welcome to the Biotools site at the University of Massachusetts Medical School. Restriction and Pattern Analysis. Transcription Factor Site Scan. Signal Sequence Cleavage Tool. PRINTS protein motifs scan. NAR Database Summary Paper. Online Genetics Resources (NHGRI). VIPR - VIrus Pathogen Resource. PATRIC: Pathosystems Resource Integration Center. The CELL: An Image Library. HSLS Online:Bioinformatics Resource Collection. OregAnno- Regulatory Annotation DB.

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biotools.umassmed.edu

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Biotools: News

http://biotools.umassmed.edu/News.php

BioTools @ UMass Medical School. Sat, Aug 20. Biotools site moved to new server with updated programs. Last updated: Monday June 01, 2009. 55 Lake Avenue N, Worcester MA 01655.

2

PrettyPlot Tool

http://biotools.umassmed.edu/cgi-bin/biobin/prettyplot

PrettyPlot displays aligned sequences, with coloring and boxing. Type or paste a multiple sequence alignment file (MSF format) into the box. Sequences must be aligned already (e.g. with PILEUP or ClustalW). Note! Multalin MSF files do not work well with this program. Results are returned as a color postscript file which can be printed at your workstation. Last modified 21Jan2009 DSL.

3

PlotORF Tool

http://biotools.umassmed.edu/cgi-bin/biobin/plotorf

PlotORF plots potential open reading frames. Type or paste a fasta formatted. DNA sequence into the box. Last modified 27Jan2009 DSL.

4

SigCleave Tool

http://biotools.umassmed.edu/cgi-bin/biobin/sigcleave

Signal Sequence Cleavage Sites. SigCleave reports protein signal cleavage sites. Type or paste a fasta formatted. Sequence into the box. Choose a weighting value for the score cut-off ( default is 3.5 ).[ info/tutorial. Last modified 27Jan2009 DSL.

5

Garnier Peptide Structure Tool

http://biotools.umassmed.edu/cgi-bin/biobin/garnier

Garnier Peptide Structure Tool. Garnier predicts protein secondary structure. Type or paste a fasta formatted sequence. Into the box . Last modified 27Jan2009 DSL.

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BioTools @ UMass Medical School. Mon, Mar 19. Welcome to the Biotools site at the University of Massachusetts Medical School. Restriction and Pattern Analysis. Transcription Factor Site Scan. Signal Sequence Cleavage Tool. PRINTS protein motifs scan. NAR Database Summary Paper. Online Genetics Resources (NHGRI). VIPR - VIrus Pathogen Resource. PATRIC: Pathosystems Resource Integration Center. The CELL: An Image Library. HSLS Online:Bioinformatics Resource Collection. OregAnno- Regulatory Annotation DB.

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