bit.riken.jp

Bioinformatics Research Unit | RIKEN Advanced Center for Computer and Communication

RIKEN Advanced Center for Computer and Communication. Software & Database. Contact & Access. RIKEN Bioinformatics Seminar Series. Life is complicated interactions of various biochemical components. Recently, massively parallel sequencers have changed life science. The sequencer can quantify miscellaneous biological phenomenon. However, it is difficult to reveal biological knowledge from huge and various sequencing data for experimental biologists. Development of novel DNA sequencing techniques.

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Bioinformatics Research Unit | RIKEN Advanced Center for Computer and Communication | bit.riken.jp Reviews

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RIKEN Advanced Center for Computer and Communication. Software & Database. Contact & Access. RIKEN Bioinformatics Seminar Series. Life is complicated interactions of various biochemical components. Recently, massively parallel sequencers have changed life science. The sequencer can quantify miscellaneous biological phenomenon. However, it is difficult to reveal biological knowledge from huge and various sequencing data for experimental biologists. Development of novel DNA sequencing techniques.

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2 メインメニュー

3 メインコンテンツへ移動

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6 protocols

7 研究内容

8 お知らせ

9 講義資料

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Bioinformatics Research Unit | RIKEN Advanced Center for Computer and Communication | bit.riken.jp Reviews

https://bit.riken.jp

RIKEN Advanced Center for Computer and Communication. Software & Database. Contact & Access. RIKEN Bioinformatics Seminar Series. Life is complicated interactions of various biochemical components. Recently, massively parallel sequencers have changed life science. The sequencer can quantify miscellaneous biological phenomenon. However, it is difficult to reveal biological knowledge from huge and various sequencing data for experimental biologists. Development of novel DNA sequencing techniques.

INTERNAL PAGES

bit.riken.jp

1

Publications | Bioinformatics Research Unit

http://bit.riken.jp/publications

RIKEN Advanced Center for Computing and Communication. Software & Database. Contact & Access. RIKEN Bioinformatics Seminar Series. Kiryu H, Furusawa C, Ko MSH, Ko SBH, Gouda N, Hayashi T. SCODE: An efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation. 2016. (submitted). bioRxiv. G Morota, F. Peñagaricano, J. L. Petersen, D. C. Ciobanu, K. Tsuyuzaki. An application of MeSH enrichment analysis in livestock. Animal Genetics. 2015. Kenjiro Adachi*, Itoshi Nikaido*.

2

Protocols | Bioinformatics Research Unit

http://bit.riken.jp/protocols

RIKEN Advanced Center for Computing and Communication. Software & Database. Contact & Access. RIKEN Bioinformatics Seminar Series. 1 Quartz-Seq: Single-Cell RNA-seq (2-13 pg Total RNA). Whole-transcript amplification for single-cell Quartz-Seq (PDF). DNA Library preparation method for Single-Cell Quartz-Seq: LIMprep. A magnetic stand for ultra-low sample. Quartz-Seq: a highly reproducible and sensitive single-cell RNA-Seq reveals non-genetic gene expression heterogeneity. All FPKM Matrix Data.

3

About | Bioinformatics Research Unit

http://bit.riken.jp/ja/about

RIKEN Advanced Center for Computing and Communication. Software & Database. Contact & Access. RIKEN Bioinformatics Seminar Series. や Software and Databases. このプロジェクトは、創薬等支援技術基盤プラットフォーム事業解析拠点機能ゲノミクスB 超微量RNAシーケンス技術の支援と高度化 (代表: 二階堂愛)によって、サポートされています。このプロジェクトは、再生医療実現拠点ネットワークプログラム技術開発個別課題 iPS 分化細胞集団の不均質性を１細胞全遺伝子解像度で高速に測定する技術の開発. 3 1細胞生物学 – 生命現象を個々の細胞から理解する. H28年10月から、JST CREST 統合1細胞解析のための革新的技術基盤: 臓器組織内未知細胞の命運機能の１細胞オミクス同時計測 (代表: 二階堂愛) が開始しました。科学計算に利用できるプライベードクラウドシステム(OpenStack Xen, Docker)もあります。 2012-2...

4

Software & Database | Bioinformatics Research Unit

http://bit.riken.jp/software

RIKEN Advanced Center for Computing and Communication. Software & Database. Contact & Access. RIKEN Bioinformatics Seminar Series. Software & Database. SCODE: An efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation. Linux distribution for Bioinformatics Analysis. A parser for files of GPS (Genome Positioning System). In Ruby, RubyGems. R package for quantitative comparison of differential ChIP-seq data. Meta-analysis of RNA-Seq count data in.

5

Member | Bioinformatics Research Unit

http://bit.riken.jp/member

RIKEN Advanced Center for Computing and Communication. Software & Database. Contact & Access. RIKEN Bioinformatics Seminar Series. Itoshi NIKAIDO, Ph.D. Yohei Sasagawa, Ph.D. Hiroki Danno, Ph.D. Tetsutaro Hayashi, Ph.D. Takatsugu Kosugi, MS. Masashi Ebisawa, Ph.D. Mana Umeda, MS. Koki Tsuyuzaki, Ph.D. Haruka OZAKI, Ph.D. Research Fellow of the Japan Society for the Promotion of Science (PD). Hirotaka MATSUMOTO, Ph.D. Mika Yoshimura, Ph.D. From Wako Service Unit). IT Infrastructure and Network.

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hackingisbelieving.org

CV - Hacking is believing

http://www.hackingisbelieving.org/cv

Advanced Center for Computing and Communication, Japan. Ruby, R/Bioconductor, Matlab, C , Python. Data analysis of Next generation sequencer, (ChIP-seq, RNA-seq). Statistics, Machine learning. A parser for files of GPS (Genome Positioning System). In Ruby, RubyGems). R package for quantitative comparison of differential. Meta-analysis of RNA-Seq count data in. Multiple studies (working with Mr. Koki. Biological Database and API. Full-text search in NCBI RefSeq and/or UniProt-KB on R. Source Forge ( itoshi.

github.com

RIKEN BiT · GitHub

https://github.com/rikenbit

Bioinformatics Research Unit, RIKEN Advanced for computer and communication. Wako, Saitama, Japan. Http:/ bit.riken.jp/. Aug 17, 2016. R compiled from source. Aug 17, 2016. Jul 29, 2016. Jul 7, 2016. Jun 21, 2016. Jan 28, 2016. Galaxy sam strt tool. Forked from myoshimura080822/galaxy sam strt tool. Mar 31, 2015. Install latest R patched version recipe. Mar 30, 2015. Mar 30, 2015. Candit Covariance-free Incremental Principle Component Analysis (CCIPCA). Mar 27, 2015. Dec 22, 2014. Aug 7, 2014. Jul 3, 2014.

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bit.riken.jp

Bioinformatics Research Unit | RIKEN Advanced Center for Computer and Communication

RIKEN Advanced Center for Computer and Communication. Software & Database. Contact & Access. RIKEN Bioinformatics Seminar Series. Life is complicated interactions of various biochemical components. Recently, massively parallel sequencers have changed life science. The sequencer can quantify miscellaneous biological phenomenon. However, it is difficult to reveal biological knowledge from huge and various sequencing data for experimental biologists. Development of novel DNA sequencing techniques.

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