blast.plantcyc.org
PMN Blast: SequenceServerPlant Metabolic Network (http://plantcyc.org) BLAST server provided by SequenceServer (http://www.sequenceserver.com)
http://blast.plantcyc.org/
Plant Metabolic Network (http://plantcyc.org) BLAST server provided by SequenceServer (http://www.sequenceserver.com)
http://blast.plantcyc.org/
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PMN Blast: SequenceServer | blast.plantcyc.org Reviews
https://blast.plantcyc.org
Plant Metabolic Network (http://plantcyc.org) BLAST server provided by SequenceServer (http://www.sequenceserver.com)
Chokepoint Reaction Finder
http://pmn.plantcyc.org/chokepoint-form.shtml
Search Genes, Proteins or RNAs. BLAST at the PMN. Google Search of this Site. Species in the PMN. Enzymes by plant species. Pathways by plant species. Omics Viewer / Metabolic Map. Browse Enzyme Commission Ontology. Omics Viewer Sample Data. Include reactions found in human. Exclude reactions found in human. Include reactions catalyzed by more than one enzyme. Exclude reactions catalyzed by more than one enzyme. Limit to reactions found in multiple pathways. Definition: A chokepoint reaction. Note: if yo...
SmartTables Directory
http://pmn.plantcyc.org/smarttables
Search Genes, Proteins or RNAs. BLAST at the PMN. Google Search of this Site. Species in the PMN. Enzymes by plant species. Pathways by plant species. Omics Viewer / Metabolic Map. Browse Enzyme Commission Ontology. Omics Viewer Sample Data. A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web. Directory of SmartTables Users. All Compound structures of Brachypodium. This group contains ...
Cellular Overview
http://pmn.plantcyc.org/overviewsWeb/celOv.shtml
Search Genes, Proteins or RNAs. BLAST at the PMN. Google Search of this Site. Species in the PMN. Enzymes by plant species. Pathways by plant species. Omics Viewer / Metabolic Map. Browse Enzyme Commission Ontology. Omics Viewer Sample Data. Pan left/right/up/down the entire diagram by holding the left mouse button, click on an object for more info, right-click (ctrl-click for Mac) for menu. Generate Bookmark for Cellular Overview. You can click and drag the bookmark:. Into your favorite bookmarks menu.
Glossary
http://pmn.plantcyc.org/glossary.shtml
Search Genes, Proteins or RNAs. BLAST at the PMN. Google Search of this Site. Species in the PMN. Enzymes by plant species. Pathways by plant species. Omics Viewer / Metabolic Map. Browse Enzyme Commission Ontology. Omics Viewer Sample Data. 0-Centered Scale, Omics Viewer. 0-centered scale: implies that the numerical data of the Omics Viewer data file can contain positive and negative values. The value 0 is considered to be the center of the numerical values provided in the data file. From 5' to 3'), RNA.
Pathway/Genome Database Concepts Guide
http://pmn.plantcyc.org/PGDBConceptsGuide.shtml
Search Genes, Proteins or RNAs. BLAST at the PMN. Google Search of this Site. Species in the PMN. Enzymes by plant species. Pathways by plant species. Omics Viewer / Metabolic Map. Browse Enzyme Commission Ontology. Omics Viewer Sample Data. Pathway/Genome Database Concepts Guide. 2 What Mechanisms Exist for Accessing PGDB Data? 43 Reaction Locations and Compartments of Metabolites. 44 Reaction Balancing and Protonation State in PGDBs. 441 Background and Motivations. 442 Protonation State Normalization.
Web Site User’s Guide for Pathway Tools-Based Web Sites
http://pmn.plantcyc.org/PToolsWebsiteHowto.shtml
Search Genes, Proteins or RNAs. BLAST at the PMN. Google Search of this Site. Species in the PMN. Enzymes by plant species. Pathways by plant species. Omics Viewer / Metabolic Map. Browse Enzyme Commission Ontology. Omics Viewer Sample Data. Web Site User’s Guide for Pathway Tools-Based Web Sites. 2 Selecting the Database to Search. 23 By Organism Properties. 3 Searching Pathway/Genome Databases. 32 Search Menu: Object Searches. 33 Search Menu → BLAST search. 34 Search Menu → Google This Site. This docum...
Download | Plant Metabolic Network
http://www.plantcyc.org/downloads/data_downloads.faces
Skip to main content. Pathway Tools Biocyc Bundle. Omics Viewer Sample Data Files. Complete copies of ALL of the plant metabolic pathway databases. Hosted by the PMN, including AraCyc, PlantCyc, CornCyc, etc. Please fill out and submit the license agreement. Please note that this license is freely available to everyone, including commercial users. The complete download, together with the Pathway Tools software. And a complete biopax.owl. Additional custom flat files. Nnn"cyc dump.yyyy.mm.dd). Are availab...
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Information Technologies Division at OriGene Technologies, Nucleotide Sequence Search
22,000 Human Full-Length Genes. OriGene has released over 22,000 full-length cDNA clones whose nucleotide sequences can be found in the public domain. They include over 75 percent of the "NM" sequences in the NCBI RefSeq Database. Since OriGene has some 800,000 physical clones in its collection, additional genes will be released as their sequences become available in the public databases. By Nucleotide Sequence, Accession Number, Protein Domain, or Keywords. Search for Human Genes by Nucleotide Sequence.
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PMN Blast: SequenceServer
Drop query sequence file here. One file at a time please. Too big a file. Can only do less than 10 MB. Only FASTA files please. Detected: mixed nucleotide and protein sequences. We can't handle that. Please try one sequence at a time. Reference Enzymes 3.1. PMN BLAST powered by SequenceServer. Priyam et al. (2015) Sequenceserver: a modern graphical user interface for custom BLAST databases. Could be a temporary network issue, or the service might be configured to "time out" long requests. Gilist String R...
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