blipkit.open-bio.org

Blipkit: Biomedical LogIc Programming Knowledge Integration Kit

Blip: Biomedical Logic Programming. Blip is a collection of logic programming modules intended primarily for bioinformatics and biomedical applications, although it contains some modules which may be of more general interest. Blip is intended to be both an application library, and a deductive database/query system. Blip is written in SWI-Prolog. A fast, robust and scalable implementation of ISO Prolog. Blip is Free Software. Available, licensed under the LGPL. Blip, aka blipkit. Can be cited as. SWI-Prol...

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Blipkit: Biomedical LogIc Programming Knowledge Integration Kit | blipkit.open-bio.org Reviews

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Blip: Biomedical Logic Programming. Blip is a collection of logic programming modules intended primarily for bioinformatics and biomedical applications, although it contains some modules which may be of more general interest. Blip is intended to be both an application library, and a deductive database/query system. Blip is written in SWI-Prolog. A fast, robust and scalable implementation of ISO Prolog. Blip is Free Software. Available, licensed under the LGPL. Blip, aka blipkit. Can be cited as. SWI-Prol...

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1 documentation

2 getting started

3 tutorial

4 architecture

5 modules

6 examples

7 applications

8 serval

9 pldoc server

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Blipkit: Biomedical LogIc Programming Knowledge Integration Kit | blipkit.open-bio.org Reviews

https://blipkit.open-bio.org

Blip: Biomedical Logic Programming. Blip is a collection of logic programming modules intended primarily for bioinformatics and biomedical applications, although it contains some modules which may be of more general interest. Blip is intended to be both an application library, and a deductive database/query system. Blip is written in SWI-Prolog. A fast, robust and scalable implementation of ISO Prolog. Blip is Free Software. Available, licensed under the LGPL. Blip, aka blipkit. Can be cited as. SWI-Prol...

INTERNAL PAGES

blipkit.open-bio.org

1

Blip: Architecture

http://blipkit.open-bio.org/architecture.html

Blip: Biomedical Logic Programming. Blip is a data integration toolkit. It wraps a variety of file formats and data resources (called bioresources. Providing a unified query layer. This figure shows how a general purpose application (in this case Amigo-NG, a serval. Web application) queries data from a variety of sources. TODO: imagemap this png. TODO: fix diagram - prolog xml transform now used in place of XSL for SBML data. At the bottom of the diagram are the bioresources. Db, etc. Each of these d...

2

Blip: Serval

http://blipkit.open-bio.org/serval.html

Blip: Biomedical Logic Programming. Prolog as a server application language. To find out more. Serval is a logical-functional framework for developing web applications. It is generic and largely independent of the bio-specific modules. However, both serval and the bio-specific modules depend upon the same utility module, so I have decided just to bundle serval with blip for now. If you are interested in a distribution that is independent on Blip, contact the developer. However, Prolog's native I/O comman...

3

Blipkit: Biomedical LogIc Programming Knowledge Integration Kit

http://blipkit.open-bio.org/index.html

Blip: Biomedical Logic Programming. Blip is a collection of logic programming modules intended primarily for bioinformatics and biomedical applications, although it contains some modules which may be of more general interest. Blip is intended to be both an application library, and a deductive database/query system. Blip is written in SWI-Prolog. A fast, robust and scalable implementation of ISO Prolog. Blip is Free Software. Available, licensed under the LGPL. Blip, aka blipkit. Can be cited as. SWI-Prol...

4

Blip: Tutorial

http://blipkit.open-bio.org/tutorial.html

Blip: Biomedical Logic Programming. The blip command-line tool. Writing applications using blip. NOTE: this section is being replaced by the tutorial section in blipdoc. The blip command-line tool. Blip comes with a command line tool to allow simple non-programmatic access to a limited subset of the functionality of the full blip package. Run with the "-h" option for full instructions. Here are some examples. If you run blip without specifying a command you will be placed in prolog query mode. Blip has b...

5

Blip: Modules

http://blipkit.open-bio.org/modules.html

Blip: Biomedical Logic Programming. The list below is incomplete. For a full list of modules, see the dynamic module documentation in blipdoc. Blip consists of different prolog modules covering different areas of knowledge withins the life sciences - sequences, analysis, ontologies, phylogenetics, pathways, etc. These modules are largely independent - you may only need to use one of the modules below for your research. Of the Main modules, some are bio. Data or domain model. Data modules can also be thou...

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blipkit.open-bio.org

Blipkit: Biomedical LogIc Programming Knowledge Integration Kit

Blip: Biomedical Logic Programming. Blip is a collection of logic programming modules intended primarily for bioinformatics and biomedical applications, although it contains some modules which may be of more general interest. Blip is intended to be both an application library, and a deductive database/query system. Blip is written in SWI-Prolog. A fast, robust and scalable implementation of ISO Prolog. Blip is Free Software. Available, licensed under the LGPL. Blip, aka blipkit. Can be cited as. SWI-Prol...

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