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UCLA Brain Mapping Center

The purpose and goal of brain mapping is to advance the understanding of the relationship between structure and function in the human brain. Scientists in this field seek to gain knowledge of the physical processes that underlie human sensation, attention awareness and cognition.

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UCLA Brain Mapping Center | bmap.ucla.edu Reviews

https://bmap.ucla.edu

The purpose and goal of brain mapping is to advance the understanding of the relationship between structure and function in the human brain. Scientists in this field seek to gain knowledge of the physical processes that underlie human sensation, attention awareness and cognition.

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narr.bmap.ucla.edu narr.bmap.ucla.edu

Applied Neurobiological Imaging

Welcome to the website for Dr. Katherine Narr's group at the UCLA Brain Mapping Center. Our group uses structural magnetic resonance imaging (sMRI), functional magnetic resonance imaging (fMRI), diffusion tensor imaging (DTI), and MR spectroscopy to investigate the neurological basis of schizophrenia and other neuropsychiatric illnesses. We are also particularly interested in investigating endophenotypes for schizophrenia and the transmission of vulnerability factors for the disease.

pipeline.bmap.ucla.edu pipeline.bmap.ucla.edu

LONI Pipeline | 

Products & Services. Pipeline Server on Amazon EC2. Brain Book: Color Paint in 3D. Get Started with Pipeline. With LONI Pipeline, researchers can create workflow protocols to run multiple computational tools, monitor their progress and quickly interpret results. The Distributed Pipeline Server allows users to run Pipeline from their individual site. Need help with running Pipeline on your server? See supported grid plugins. Access hundreds of predefined neuroimaging solutions, including data, modules and...

itools.bmap.ucla.edu itools.bmap.ucla.edu

iTools | 

Laboratory of Neuro Imaging. ITools – UML Design Diagrams. Web-services Data Language (WSDL). Browsing the iTools Resources. ITools Search for Resources. Adding Resources to iTools. Viewing Resource Meta Data. Specifically, iTools provides an infrastructure for classification, categorization and integration of different computational biology resources across space-and-time scales, biomedical problems, computational infrastructures and mathematical foundations. This work was funded by the National Institu...

shattuck.bmap.ucla.edu shattuck.bmap.ucla.edu

Shattuck Research Group

Ahmanson-Lovelace Brain Mapping Center. David Geffen School of Medicine. University of California, Los Angeles. 635 Charles Young Drive South, Suite 225. Los Angeles, CA 90095-7334. Welcome to the website for David Shattuck. S research group at the Ahmanson-Lovelace Brain Mapping Center. We are focused on the development of novel algorithms for processing magnetic resonance imaging data and the application of these algorithms to the study of the human brain. Ahmanson-Lovelace Brain Mapping Center.

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Automated Image Registration

Old AIR 2.0 documentation. MultiTracer Version 1 (Documentation and Software). MultiTracer Version 2 (Documentation and Software).

INTERNAL PAGES

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UCLA Brain Mapping Center - Calendars

http://www.bmap.ucla.edu/services/scheduling/calendars

UCLA Brain Mapping Center. Data Analysis Lab Software. Imaging and TMS Rates. Scientific and creative works. UCLA Brain Mapping Center. 660 Charles E. Young Drive South. Los Angeles, CA 90095.

2

UCLA Brain Mapping Center - Services

http://www.bmap.ucla.edu/services

UCLA Brain Mapping Center. Data Analysis Lab Software. Imaging and TMS Rates. Scientific and creative works. UCLA Brain Mapping Center. 660 Charles E. Young Drive South. Los Angeles, CA 90095.

3

UCLA Brain Mapping Center - Prep Room

http://www.bmap.ucla.edu/services/scheduling/prep_room

UCLA Brain Mapping Center. Data Analysis Lab Software. Imaging and TMS Rates. Scientific and creative works. Private Research Prep Room. Bull; BMC Tech Line:. Mac with Matlab 7.5 (network account required). Bull; 3 desk stations. Bull; Button box setup. Bull; File and supply storage upon request. Researchers may request key pad access to the Prep Room when they submit a BMC Access Request Form. The Prep Room operates via a priority policy, r. Priority Scheduling Flow Chart. UCLA Brain Mapping Center.

4

UCLA Brain Mapping Center - The DIVE

http://www.bmap.ucla.edu/services/dive

UCLA Brain Mapping Center. Data Analysis Lab Software. Imaging and TMS Rates. Scientific and creative works. UCLA Brain Mapping Center. 660 Charles E. Young Drive South. Los Angeles, CA 90095.

5

UCLA Brain Mapping Center - Data Center

http://www.bmap.ucla.edu/services/data_center

UCLA Brain Mapping Center. Data Analysis Lab Software. Imaging and TMS Rates. Scientific and creative works. BMAP Data Center Resources. A 306-node Oracle V20z cluster. Each compute node has dual 2.4GHz AMD Opteron processors with 8GB of memory. (612 cores total). An 80-node Oracle X2200 M2 cluster. Each compute node has dual 2.2GHz quad-core AMD Opteron processors and 16GB of memory. (640 cores total). For additional information, please contact Jonathan Pierce at JPierce@mednet.ucla.edu.

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shattuck.bmap.ucla.edu shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/resources

Our group is interested in the wide-spread dissemination of tools and resources that are of use to the neuroimaging community. We have developed publicly available resources for neuroimaging including:. The LPBA40 Probabilistic Brain Atlas. Mirza M, Adisetiyo V, Hojatkashani C, Salamon G, Narr KL, Poldrack RA, Bilder RM, Toga AW (2008) Construction of a 3D Probabilistic Atlas of Human Brain Structures NeuroImage. The Segmentation Validation Engine. Ahmanson-Lovelace Brain Mapping Center.

shattuck.bmap.ucla.edu shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/conference

Chambers MC, Bhushan C, Haldar JP, Leahy RM, Shattuck DW (accepted) "Correcting inhomogeneity-induced distortion in FMRI using non-rigid registration", IEEE International Symposium on Biomedicine (ISBI'15). Brooklyn, New York, April 2015. Joshi AA, Ashrafulla S, Shattuck DW. Damasio H, Leahy RM (2013) Cortical Shape Analysis using the Anisotropic Global Point Signature, MFCA 2013: 4th MICCAI workshop on Mathematical Foundations of Computational Anatomy. Nagoya, Japan, September 2013. Barcelona, May 2012.

shattuck.bmap.ucla.edu shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/software

BrainSuite is a suite of image analysis tools designed to process magnetic resonance images (MRI) of the human head. BrainSuite provides an automatic sequence to extract genus-zero cortical surface mesh models from the MRI. It also provides a set of viewing tools for exploring image and surface data. The latest release includes graphical user interface and command line versions of the tools. BrainSuite is available for download from the BrainSuite download site. Ahmanson-Lovelace Brain Mapping Center.

shattuck.bmap.ucla.edu shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/software/shiva

The Synchronized Histological Image Viewing Architecture (SHIVA) is a Java-based visualization and analysis application. SHIVA can process 2D and 3D image files and provides convenient methods for users to overlay multiple datasets. SHIVA is available from the UCLA Brain Mapping Center's Software Download site. SHIVA was developed by Heng Yuan, Allan MacKenzie-Graham, and David W. Shattuck. Ahmanson-Lovelace Brain Mapping Center.

research.cchmc.org research.cchmc.org

Welcome | Cincinnati MR Imaging of NeuroDevelopment

https://research.cchmc.org/c-mind

Preparing for Your Visit. Pulse Sequence Code (Philips Scanner). 3 MRI Scan Protocols. 4 fMRI task protocols. 6 Behavioral methods for desensitization to the scanner environment. 8 Quality Assurance Procedures. 9 Analysis of Imaging Data. 10 Database Query Interface. 11 Exporting and Using C-MIND Data. NICHD Spotlight on C-MIND. First Release Database available. Brain mapping Tools Now Available. Cincinnati Children's Hospital Medical Center. Cincinnati, Ohio 45229-3039. And University of Michigan. And c...

shattuck.bmap.ucla.edu shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/hindex

Journal publications contributing to my h-index, as computed from ISI Web of Knowledge (January 2016). Ie, 24 of my publications have been cited at least 24 times each). Cited by 480] Shattuck DW. Sandor-Leahy SR, Schaper KA, Rottenberg DA, and Leahy RM, "Magnetic Resonance Image Tissue Classification Using a Partial Volume Model," NeuroImage. Vol 13, No. 5, May 2001, pp. 856-876. Cited by 287] Shattuck DW. Cited by 272] Shattuck DW. 2004 Jun 4;304(5676):1509-13. Cited by 108] Shattuck DW. And Leahy RM (...

shattuck.bmap.ucla.edu shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/abstracts

Joshi AA, Choi S, Shattuck DW, Leahy RM (2016) SVReg: Surface-Constrained Volumetric Registration in BrainSuite 22nd Annual Meeting of the Organization for Human Brain Mapping. Geneva, Switzerland, June 2016. Philips OR, Joshi SH, Narr KL, Shattuck DW, Singh M, Ploner C, Pruess H, Paul F, Di Paola M, Finke C (2016) Returning to Normalcy: The Superficial White matter in Anti-NMDA Receptor Encephalitis, 22nd Annual Meeting of the Organization for Human Brain Mapping. Geneva, Switzerland, June 2016. Hamburg...

shattuck.bmap.ucla.edu shattuck.bmap.ucla.edu

David Shattuck - Publications

http://shattuck.bmap.ucla.edu/publications

Wang ZI, Krishnan B, Shattuck DW, Leahy RM, Moosa ANV, Wyllie E, Burgess RC, Al-Sharif NB, Joshi AA, Alexopoulos AV, Mosher JC, Udayasankar U, the Pediatric Imaging Neurocognition and Genetics Study, Jones SE (in press) Automated MRI Volumetric Analysis in Epilepsy Patients with Rasmussen's Syndrome, accepted to American Journal of Neuroradiology. Phillips O, Joshi S, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck D. Wei M, Joshi AA, Zhang M, Meid L, Manis FR, He Q, Beattie RL, Xue G, Shattuck DW.

shattuck.bmap.ucla.edu shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/journal

Wang ZI, Krishnan B, Shattuck DW, Leahy RM, Moosa ANV, Wyllie E, Burgess RC, Al-Sharif NB, Joshi AA, Alexopoulos AV, Mosher JC, Udayasankar U, the Pediatric Imaging Neurocognition and Genetics Study, Jones SE (in press) Automated MRI Volumetric Analysis in Epilepsy Patients with Rasmussen's Syndrome, accepted to American Journal of Neuroradiology. Phillips O, Joshi S, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck D. Wei M, Joshi AA, Zhang M, Meid L, Manis FR, He Q, Beattie RL, Xue G, Shattuck DW.

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