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Book ASG-R

Tuesday, February 8, 2011. Lm(): different stories seen. Qq - lm(appleto$GEP appleto$ch10744725). Lm(formula = appleto$GEP appleto$ch10744725). Min 1Q Median 3Q Max. 100670 -0.46175 -0.04565 0.33614 1.65952. Estimate Std. Error t value Pr( t ). Intercept) 1.6466 0.2527 6.515 3.17e-08 * *. Appleto$ch10744725AG 0.4980 0.2776 1.794 0.0788 . Appleto$ch10744725GG 0.5261 0.2899 1.815 0.0755 . Residual standard error: 0.6191 on 51 degrees of freedom. 38 observations deleted due to missingness). Model - lm(WNK1 ...

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Book ASG-R | bookasgr.blogspot.com Reviews

<META> DESCRIPTION

Tuesday, February 8, 2011. Lm(): different stories seen. Qq - lm(appleto$GEP appleto$ch10744725). Lm(formula = appleto$GEP appleto$ch10744725). Min 1Q Median 3Q Max. 100670 -0.46175 -0.04565 0.33614 1.65952. Estimate Std. Error t value Pr( t ). Intercept) 1.6466 0.2527 6.515 3.17e-08 * *. Appleto$ch10744725AG 0.4980 0.2776 1.794 0.0788 . Appleto$ch10744725GG 0.5261 0.2899 1.815 0.0755 . Residual standard error: 0.6191 on 51 degrees of freedom. 38 observations deleted due to missingness). Model - lm(WNK1 ...

<META> KEYWORDS

1 book asg r

2 summary qq

3 call

4 residuals

5 coefficients

6 ce summary model $coef

7 cat pval

8 sink tmp csv

9 x character

10 sink

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book asg r,summary qq,call,residuals,coefficients,ce summary model $coef,cat pval,sink tmp csv,x character,sink,posted by,statistics and genetics,no comments,email this,blogthis,share to twitter,share to facebook,share to pinterest,define the trait,freq

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Book ASG-R | bookasgr.blogspot.com Reviews

https://bookasgr.blogspot.com

Tuesday, February 8, 2011. Lm(): different stories seen. Qq - lm(appleto$GEP appleto$ch10744725). Lm(formula = appleto$GEP appleto$ch10744725). Min 1Q Median 3Q Max. 100670 -0.46175 -0.04565 0.33614 1.65952. Estimate Std. Error t value Pr( t ). Intercept) 1.6466 0.2527 6.515 3.17e-08 * *. Appleto$ch10744725AG 0.4980 0.2776 1.794 0.0788 . Appleto$ch10744725GG 0.5261 0.2899 1.815 0.0755 . Residual standard error: 0.6191 on 51 degrees of freedom. 38 observations deleted due to missingness). Model - lm(WNK1 ...

INTERNAL PAGES

bookasgr.blogspot.com

1

Book ASG-R: p46-47: Example 2.5 - M-sample tests for association of a quantitative trait

http://bookasgr.blogspot.com/2011/01/p46-47-example-25-m-sample-tests-for.html

Thursday, January 27, 2011. P46-47: Example 2.5 - M-sample tests for association of a quantitative trait. ANOVA and Kruskal-Wallis (K-W) test. We do not want to impose any prior assumptions about the genetic model and so decide to treat genotype as a three-level factor variable. Geno - as.factor. Read the genotype data as a factor variable. Trait - NDRM.CH. Trait Geno, na.action=na.exclude. Lm(formula = Trait Geno, na.action = na.exclude). Min 1Q Median 3Q Max. Estimate Std. Error t value Pr( t ). Residu...

2

Book ASG-R: January 2011

http://bookasgr.blogspot.com/2011_01_01_archive.html

Thursday, January 27, 2011. P46-47: Example 2.5 - M-sample tests for association of a quantitative trait. ANOVA and Kruskal-Wallis (K-W) test. We do not want to impose any prior assumptions about the genetic model and so decide to treat genotype as a three-level factor variable. Geno - as.factor. Read the genotype data as a factor variable. Trait - NDRM.CH. Trait Geno, na.action=na.exclude. Lm(formula = Trait Geno, na.action = na.exclude). Min 1Q Median 3Q Max. Estimate Std. Error t value Pr( t ). Residu...

3

Book ASG-R: p45: Example 2.4 - Two-sample t-test for a quantitative trait

http://bookasgr.blogspot.com/2011/01/p45-example-24-two-sample-t-test-for.html

Thursday, January 27, 2011. P45: Example 2.4 - Two-sample t-test for a quantitative trait. Fms - read.delim ("FMS data edited.dat", header=T,sep=" t"). NamesResistinSnps - names(fms)[substr(names(fms),1,8)= "resistin"]. FmsResistin - fms[,is.element(names(fms),NamesResistinSnps)]. Genotype" creates a genotype object;. Sep=" means genotype format is like AA,AT or TT; nothing is placed between two alleles, different from A/T or A-T;. Reorder" sorts alleles in order by frequency;. Define the major allele.

4

Book ASG-R: February 2011

http://bookasgr.blogspot.com/2011_02_01_archive.html

Tuesday, February 8, 2011. Lm(): different stories seen. Qq - lm(appleto$GEP appleto$ch10744725). Lm(formula = appleto$GEP appleto$ch10744725). Min 1Q Median 3Q Max. 100670 -0.46175 -0.04565 0.33614 1.65952. Estimate Std. Error t value Pr( t ). Intercept) 1.6466 0.2527 6.515 3.17e-08 * *. Appleto$ch10744725AG 0.4980 0.2776 1.794 0.0788 . Appleto$ch10744725GG 0.5261 0.2899 1.815 0.0755 . Residual standard error: 0.6191 on 51 degrees of freedom. 38 observations deleted due to missingness). Model - lm(WNK1 ...

5

Book ASG-R: lm(): different stories seen

http://bookasgr.blogspot.com/2011/02/lm-different-stories-seen.html

Tuesday, February 8, 2011. Lm(): different stories seen. Qq - lm(appleto$GEP appleto$ch10744725). Lm(formula = appleto$GEP appleto$ch10744725). Min 1Q Median 3Q Max. 100670 -0.46175 -0.04565 0.33614 1.65952. Estimate Std. Error t value Pr( t ). Intercept) 1.6466 0.2527 6.515 3.17e-08 * *. Appleto$ch10744725AG 0.4980 0.2776 1.794 0.0788 . Appleto$ch10744725GG 0.5261 0.2899 1.815 0.0755 . Residual standard error: 0.6191 on 51 degrees of freedom. 38 observations deleted due to missingness). Model - lm(WNK1 ...

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Book ASG-R

Tuesday, February 8, 2011. Lm(): different stories seen. Qq - lm(appleto$GEP appleto$ch10744725). Lm(formula = appleto$GEP appleto$ch10744725). Min 1Q Median 3Q Max. 100670 -0.46175 -0.04565 0.33614 1.65952. Estimate Std. Error t value Pr( t ). Intercept) 1.6466 0.2527 6.515 3.17e-08 * *. Appleto$ch10744725AG 0.4980 0.2776 1.794 0.0788 . Appleto$ch10744725GG 0.5261 0.2899 1.815 0.0755 . Residual standard error: 0.6191 on 51 degrees of freedom. 38 observations deleted due to missingness). Model - lm(WNK1 ...

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