BORRELIA.MLST.NET

Borrelia burgdorferi - Database

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/borrelia/. You can still use eBURST and we shall be updating shortly:.

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Borrelia burgdorferi - Database | borrelia.mlst.net Reviews

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Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/borrelia/. You can still use eBURST and we shall be updating shortly:.

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2 mlstnet

3 bburgdorferi mlst net

4 data analysis

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9 bpseudomallei

10 calbicans

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Borrelia burgdorferi - Database | borrelia.mlst.net Reviews

https://borrelia.mlst.net

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/borrelia/. You can still use eBURST and we shall be updating shortly:.

INTERNAL PAGES

borrelia.mlst.net

1

Borrelia burgdorferi - Organismal Information

http://borrelia.mlst.net/earth

View geographical locations of isolates in the database and details regarding Sequence Types per country. Click the Google icon to view Borrelia burgdorferi. A Javascript enabled browser is required. An Installation of Google Earth is required.

2

ST's as HTML

http://borrelia.mlst.net/sql/refset.asp

Compare your allelic profile to the reference set of ST's. Please enter your QUERY allelic profile in the following format - 1,2,3,4,5,6,7,8. Ie separated by commas). You must enter 8 digits or you will not be able to see a tree. To use the tree drawing program, please enable Java on your browser.

3

Concatenation

http://borrelia.mlst.net/sql/concatenate

Sequences are trimmed to the 1 reading frame). CONCATENATE ONE EXAMPLE OF EACH ST in MEGA. THE NUCLEOTIDE SEQUENCES AT THE EIGHT LOCI - Please enter the ST numbers of the STs whose sequences you would like to concatenate, ie 46 for ST46. YOUR OWN ALLELIC PROFILE - Enter your profile below. Below each box is the highest allele number present in the database). YOUR OWN SEQUENCES (enter only 1 unbroken string ie no line breaks etc.).

4

Borrelia burgdorferi - Organismal Information

http://borrelia.mlst.net/misc/info.asp

Lyme borreliosis (LB) is the most frequent vector-borne disease in humans in the temperate zone of the Northern Hemisphere. Clinical symptoms include arthritis, skin manifestations, such as acrodermatis chronica atrophicans (ACA) or erythema migrans (EM), and neurological disorders, such as facial palsy. The zoonotic disease is caused by several species belonging to the LB group of spirochaetes within the genus. A novel MLST scheme has recently been developed for. The development and validation of the sc...

5

Borrelia burgdorferi - Database

http://borrelia.mlst.net/default.asp

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/borrelia/. You can still use eBURST and we shall be updating shortly:.

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sepidermidis.mlst.net

Staphylococcus epidermidis - Organismal Information

http://sepidermidis.mlst.net/earth

View geographical locations of isolates in the database and details regarding Sequence Types per country. Click the Google icon to view Staphylococcus epidermidis. A Javascript enabled browser is required. An Installation of Google Earth is required.

sepidermidis.mlst.net

Staphylococcus epidermidis - Organismal Information

http://sepidermidis.mlst.net/misc/info.asp

Multilocus sequence typing of Staphylococcus epidermidis. PCR Conditions and Sequencing. Determining Allelic Numbers and Sequence Types. Comparison of Isolates With the S. epidermidis. Has become a leading cause of nosocomial infections. Its ability to produce a thick, multilayered biofilm allows S. epidermidis. Remains a clinically important pathogen. Three MLST schemes were previously available for S. epidermidis. Two of which were published during the same month by Wang et al. And Wisplinghoff et al.

sepidermidis.mlst.net

Staphylococcus epidermidis - Links

http://sepidermidis.mlst.net/misc/links.asp

sepidermidis.mlst.net

MLST - Unique profile treedraw

http://sepidermidis.mlst.net/eburst

Click here to see new features in Version 3. Please make a choice -. Enter your own profile data. Run eBURST on the entire. To download the entire eBURSTv3 readme as .pdf. Or for full instructions and Readme please visit http:/ eburst.mlst.net.

saureus.mlst.net

MLST - Unique profile treedraw

http://saureus.mlst.net/eburst

Click here to see new features in Version 3. Please make a choice -. Enter your own profile data. Run eBURST on the entire. To download the entire eBURSTv3 readme as .pdf. Or for full instructions and Readme please visit http:/ eburst.mlst.net.

ssuis.mlst.net

Streptococcus suis - Organismal Information

http://ssuis.mlst.net/misc/info.asp

Primers and PCR conditions for MLST of S.suis. Internal fragments of the 5-enolpyruvylshikimate 3-phosphate synthase (aroA), 60 KDa chaperonin (cpn60), peroxide resistance (dpr), glucose kinase (gki), DNA mismatch repair protein (mutS), homologous recombination factor (recA) and aspartokinase (thrA) genes were amplified by PCR using the following primer pairs. AroA-up 5’ TTCCATGTGCTTGAGTCGCTA 3’ and. AroA-dn 5’ ACGTGACCTACCTCCGTTGAC 3’. Cpn-up 5’ TTGAAAAACGTRACKGCAGGTGC 3’and. King, S.J., Leigh, ...The S...

bhenselae.mlst.net

MLST - Unique profile treedraw

http://bhenselae.mlst.net/eburstv3

New features in eBURSTv3 are as follows -. JAVA Webstart implementation -allowing local install. Implementation of MultilocusML allowing comprehensive database integration and querying based on eBURST groups. Ability to upload and differentially display user strains against strains within the. Please make a choice -. Run eBURST on the entire. Enter your own profile data for direct comparison against database strains. To download the entire eBURST readme as .pdf.

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Borrelia burgdorferi - Database

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/borrelia/. You can still use eBURST and we shall be updating shortly:.

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