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blog.karinlag.no

The one where I went to Sweden | The Devil in the Details

https://blog.karinlag.no/2014/06/sweden

The Devil in the Details. The one where I went to Sweden. I spent some days two weeks ago in Stockholm, Sweden. Lex Nederbragt. And I were invited by SciLifeLab. To teach a Software Carpentry. Workshop there. This coincided with the very first PyCon Sweden Conference. And as the organizers would have it, I got to present a talk. The workshop went very well. Lex and I taught the by-now fairly well known novice workshop. If you want one at your institution, let them know. The conference and my talk. Speaki...

blog.karinlag.no

Lectures | The Devil in the Details

https://blog.karinlag.no/category/lectures

The Devil in the Details. Lecture on bacterial typing and whole genome data. A week ago, I was at a workshop in Denmark. This was for a Nordic Working Group for Microbiology and Animal Health and Welfare (NMDD). Meeting on Source attribution of. In the Nordic countries. We were around 12 people or thereabouts, mostly from the modelling side of the source attribution table. Since starting my new job at the Norwegian Veterinary Institute. Which proved very useful in the discussions. December 18, 2015.

blog.karinlag.no

RNAmmer 1.2 install issues | The Devil in the Details

https://blog.karinlag.no/2013/10/rnammer-install

The Devil in the Details. RNAmmer 1.2 install issues. Is getting on in years, but it is still heavily used, something that we, the authors deeply appreciate. However, it is not always easy to install. Here, I describe what needs to be done in order to get it up and running. The changes that have to be introduced are to be found in this section:. The next thing that has to be done, is to get the right HMMer installation and to figure out where perl is. You should now be able to do. Remove the two instance...

blog.karinlag.no

Rnammer | The Devil in the Details

https://blog.karinlag.no/category/rnammer

The Devil in the Details. RNAmmer 1.2 install issues. Is getting on in years, but it is still heavily used, something that we, the authors deeply appreciate. However, it is not always easy to install. Here, I describe what needs to be done in order to get it up and running. The changes that have to be introduced are to be found in this section:. The next thing that has to be done, is to get the right HMMer installation and to figure out where perl is. You should now be able to do. Remove the two instance...

rise.fiu.edu

FIU's Minority Opportunity in Research Programs

http://rise.fiu.edu/rise/faculty.shtml

Minority Opportunities in Biomedical Research Programs. Past and Current MARC U*STAR Fellows. Past and Current NIGMS RISE Fellows. 2013 NIGMS RISE Newsletter. ABR Conference Room Request. NIH Student Appointment Forms. Traveling to a Scientific Meeting? Graduate Programs in the Biomedical Sciences. MD / Ph.D Programs. Alexander Agoulnik, Ph.D. College of Medicine, Department of Human and Molecular Genetics. Medicine.fiu.edu/human molecular.php? Marisela Agudelo, Ph.D. Lorraine Bahrick, Ph.D. I am interes...

blog.karinlag.no

Python | The Devil in the Details

https://blog.karinlag.no/category/python

The Devil in the Details. Basic bioinformatics python course, part II. This entry was posted in python. October 25, 2013. Basic bioinformatics python course, part I. The only note here is that there are some spelling mistakes in it, and that it is from 2009. Python has progressed to Python version 3 now, whereas the book is at version 2. However, for a beginning programmer, this should not make too much of a difference. Part 1: The basics. This entry was posted in python. October 2, 2013. March 10, 2017.

blog.karinlag.no

Bestpractices | The Devil in the Details

https://blog.karinlag.no/category/bestpractices

The Devil in the Details. Error detection. If you know what you did, it is easier later to discover what went wrong if there is something in the results that do not add up. It can be very easy to write 2 instead of 3 in an option setting, and when working with sequences, ATGGC is very close to ATGCC. Defending the results in reply to a reviewer. A reviewer might ask questions about the analyses. If the log files detail not only how the results were produced, but also why various decisions were ma...Repro...

blog.karinlag.no

Uncategorized | The Devil in the Details

https://blog.karinlag.no/category/uncategorized

The Devil in the Details. 8216;Sorting out Sorting’. There are times when my nerd shows more than usual. I recently found a movie on YouTube that that brought back a lot of nerdy memories from my studies. I got my bachelor and masters degree at the University of Bergen. The movie in case is one that used to be shown in the last lecture in the ‘Data Structures and Algorithms’. I do believe that somebody at some point actually made a banner in support of bubblesort. This entry was posted in Uncategorized.

blog.karinlag.no

Curriculum Vitae | The Devil in the Details

https://blog.karinlag.no/curriculum-vitae

The Devil in the Details. 1/7-2013 – present. Assistant professor, 20%. Computational Life Science initiative, Department of Informatics, University of Oslo, Norway. 1/10-2014 – present. Dept of Medical Genetics, Oslo University Hospital, Oslo, Norway. 22/1-2013 – 30/9-2014. Norwegian Sequencing Centre, Oslo University Hospital, Oslo, Norway. In addition I maintained and developed analysis software and pipelines, both for internal use and for collaborative projects. I was also involved in the day-to-...