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We will be hosting a BrainSuite training workshop in Vancouver the day before OHBM 2017 begins. Graduate students, post-docs, faculty, research staff, and others interested in learning more about using BrainSuite in their research are welcome to attend. Registration details are available on our website. We will provide overviews of the different stages of processing and will have several experienced users on-hand to assist you in learning to use the software. The goal of this training workshop is to introdu

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BrainSuite | magnetic resonance image analysis tools | brainsuite.org Reviews

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We will be hosting a BrainSuite training workshop in Vancouver the day before OHBM 2017 begins. Graduate students, post-docs, faculty, research staff, and others interested in learning more about using BrainSuite in their research are welcome to attend. Registration details are available on our website. We will provide overviews of the different stages of processing and will have several experienced users on-hand to assist you in learning to use the software. The goal of this training workshop is to introdu

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BrainSuite | magnetic resonance image analysis tools | brainsuite.org Reviews

https://brainsuite.org

We will be hosting a BrainSuite training workshop in Vancouver the day before OHBM 2017 begins. Graduate students, post-docs, faculty, research staff, and others interested in learning more about using BrainSuite in their research are welcome to attend. Registration details are available on our website. We will provide overviews of the different stages of processing and will have several experienced users on-hand to assist you in learning to use the software. The goal of this training workshop is to introdu

SUBDOMAINS

forums.brainsuite.org

BrainSuite | magnetic resonance image analysis tools

1 month, 4 weeks ago. Surface and Volume Registration (SVReg). BrainSuite Diffusion Pipeline (BDP). 2 weeks, 2 days ago. BrainSuite Statistics toolbox (BSS). 1 month, 2 weeks ago. BrainSuite Graphical User Interface. 1 month, 4 weeks ago. Post any questions not related to the other sections. 1 week, 2 days ago. Surface and Volume Registration (SVReg). BrainSuite Diffusion Pipeline (BDP). BrainSuite Statistics toolbox (BSS). BrainSuite Graphical User Interface.

INTERNAL PAGES

brainsuite.org

1

BrainSuite | Tutorials: Cortical Surface Extraction Sequence

http://brainsuite.org/tutorials/cseexcercise

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. Tutorials: Cortical Surface Extraction Sequence. Download the file for this tutorial here. More information on the complete dataset is available online here. Run Full Co...

2

BrainSuite | Quick Start: Diffusion Imaging

http://brainsuite.org/quickstart/dti

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. Quick Start: Diffusion Imaging. Generated by BrainSuite’s Cortical Surface Extraction Sequence. More detailed information about BDP is available in the Processing. Can b...

3

BrainSuite | Quick Start: Extract a Brain

http://brainsuite.org/quickstart/cse

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. Quick Start: Extract a Brain. The process is explained in detail in the Processing. Section of this site and in published articles. Automatic Processing Using GUI. Via t...

4

BrainSuite | Diffusion MRI and Connectivity Visualization Tools

http://brainsuite.org/demonstration-videos/dmri

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. Diffusion MRI and Connectivity Visualization Tools. UCLA Brain Mapping Center. BrainSuite at the 2016 UCLA NITP Advanced Neuroimaging Summer Program.

5

BrainSuite | Cortical Surface Extraction

http://brainsuite.org/processing/surfaceextraction

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. Shattuck et al., 2001. Skull and Scalp (Optional). To align a multi-subject atlas average brain image ( ICBM452. Rex et al., 2003. To the subject brain image. This a...

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shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/resources

Our group is interested in the wide-spread dissemination of tools and resources that are of use to the neuroimaging community. We have developed publicly available resources for neuroimaging including:. The LPBA40 Probabilistic Brain Atlas. Mirza M, Adisetiyo V, Hojatkashani C, Salamon G, Narr KL, Poldrack RA, Bilder RM, Toga AW (2008) Construction of a 3D Probabilistic Atlas of Human Brain Structures NeuroImage. The Segmentation Validation Engine. Ahmanson-Lovelace Brain Mapping Center.

shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/conference

Chambers MC, Bhushan C, Haldar JP, Leahy RM, Shattuck DW (accepted) "Correcting inhomogeneity-induced distortion in FMRI using non-rigid registration", IEEE International Symposium on Biomedicine (ISBI'15). Brooklyn, New York, April 2015. Joshi AA, Ashrafulla S, Shattuck DW. Damasio H, Leahy RM (2013) Cortical Shape Analysis using the Anisotropic Global Point Signature, MFCA 2013: 4th MICCAI workshop on Mathematical Foundations of Computational Anatomy. Nagoya, Japan, September 2013. Barcelona, May 2012.

shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/software

BrainSuite is a suite of image analysis tools designed to process magnetic resonance images (MRI) of the human head. BrainSuite provides an automatic sequence to extract genus-zero cortical surface mesh models from the MRI. It also provides a set of viewing tools for exploring image and surface data. The latest release includes graphical user interface and command line versions of the tools. BrainSuite is available for download from the BrainSuite download site. Ahmanson-Lovelace Brain Mapping Center.

shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/software/shiva

The Synchronized Histological Image Viewing Architecture (SHIVA) is a Java-based visualization and analysis application. SHIVA can process 2D and 3D image files and provides convenient methods for users to overlay multiple datasets. SHIVA is available from the UCLA Brain Mapping Center's Software Download site. SHIVA was developed by Heng Yuan, Allan MacKenzie-Graham, and David W. Shattuck. Ahmanson-Lovelace Brain Mapping Center.

shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/hindex

Journal publications contributing to my h-index, as computed from ISI Web of Knowledge (January 2016). Ie, 24 of my publications have been cited at least 24 times each). Cited by 480] Shattuck DW. Sandor-Leahy SR, Schaper KA, Rottenberg DA, and Leahy RM, "Magnetic Resonance Image Tissue Classification Using a Partial Volume Model," NeuroImage. Vol 13, No. 5, May 2001, pp. 856-876. Cited by 287] Shattuck DW. Cited by 272] Shattuck DW. 2004 Jun 4;304(5676):1509-13. Cited by 108] Shattuck DW. And Leahy RM (...

shattuck.bmap.ucla.edu

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/abstracts

Joshi AA, Choi S, Shattuck DW, Leahy RM (2016) SVReg: Surface-Constrained Volumetric Registration in BrainSuite 22nd Annual Meeting of the Organization for Human Brain Mapping. Geneva, Switzerland, June 2016. Philips OR, Joshi SH, Narr KL, Shattuck DW, Singh M, Ploner C, Pruess H, Paul F, Di Paola M, Finke C (2016) Returning to Normalcy: The Superficial White matter in Anti-NMDA Receptor Encephalitis, 22nd Annual Meeting of the Organization for Human Brain Mapping. Geneva, Switzerland, June 2016. Hamburg...

shattuck.bmap.ucla.edu

David Shattuck - Publications

http://shattuck.bmap.ucla.edu/publications

Wang ZI, Krishnan B, Shattuck DW, Leahy RM, Moosa ANV, Wyllie E, Burgess RC, Al-Sharif NB, Joshi AA, Alexopoulos AV, Mosher JC, Udayasankar U, the Pediatric Imaging Neurocognition and Genetics Study, Jones SE (in press) Automated MRI Volumetric Analysis in Epilepsy Patients with Rasmussen's Syndrome, accepted to American Journal of Neuroradiology. Phillips O, Joshi S, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck D. Wei M, Joshi AA, Zhang M, Meid L, Manis FR, He Q, Beattie RL, Xue G, Shattuck DW.

forums.brainsuite.org

Download | BrainSuite

http://forums.brainsuite.org/download

Download BrainSuite v.16a1. Released 15 September 2016. Please login to download BrainSuite. Keep me signed in. If you have lost your password, you may reset it here. If you do not have a download account for the brainsuite.org site, you may register here. Windows 64-bit (7, 8, 10, Vista). Mac OS X (OSX 10.8 or greater). Linux 64-bit (glibc 2.14, glibc 3.4.19 or greater). Memory: 2 GB (4 GB recommended). Windows users may also need to install the. MCR 2015b for 64-bit Mac. MCR 2015b for 64-bit Windows.

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Register and Label a Brain. Cortical Surface Extraction Sequence. Tutorials: Cortical-Based Morphometry Analysis. SVReg Binaries and Modules. BrainSuite and Nipype Installation Guide. Nipype Example: Cortical Surface Extraction. BrainSuite in Nipype: Interactive Tutorial. DFS : surface file. DFC : curve file. Welcome to the BrainSuite Website. We are pleased to announce the release of BrainSuite version 18a. Visit the BrainSuite Forums. New automated skull-stripping parameter tuning. Source code (C and M...

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