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Generic Genome Browser

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. GBrowse documentation,...

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Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. GBrowse documentation,...

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2 var/www/gbrowse2/tutorial

3 var/www/gbrowse2/example scripts

4 example databases

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6 advanced example

7 yeast renderfarm example

8 etc/init d/gbrowse start

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10 http / your host/gb2/gbrowse/yeast

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Generic Genome Browser | browse2.big.ac.cn Reviews

https://browse2.big.ac.cn

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. GBrowse documentation,...

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Example Perl scripts that use the GBrowse2 REST API

http://browse2.big.ac.cn/example_scripts

This director contains little Perl scripts that illustrate how to do stuff with the GBrowse2 REST API. Gbrowse get sessionid.pl. Print out a valid GBrowse session. A new session will be created the first time it is used. On subsequent invocations, it will reuse the existing session. The session cookie is stored in /.gbrowse session. Delete this file to force a new session. Gbrowse new sessionid.pl. Start a brand new GBrowse session and print out the session ID. A new session will be used every time.

2

wolf snp database: 201 bp from chr1:3,362,913..3,363,113

http://browse2.big.ac.cn/mgb2/gbrowse/yeast

Dump selection as FASTA. Submit selection to UCSC BLAT. Submit selection to NCBI BLAST. Help with this browser. Show my user ID. Log in / create account. Wolf snp database: 201 bp from chr1:3,362,913.3,363,113. Download Decorated FASTA File. SNP@Evolution: Human Evolution GBrowser (HapMap Phase II B36). SNP@Evolution: Human Evolution GBrowser (HapMap Phase III B36). Show Active Tracks Only. Help with uploading custom tracks]. There are no tracks yet. Add custom tracks : [From text].

3

GBrowse Administration Tutorial

http://browse2.big.ac.cn/tutorial/tutorial.html

Generic Genome Browser Version 2: A Tutorial for Administrators. Author: Lincoln Stein, 20 January 2010. This is an extensive tutorial to take you through the main features and gotchas of configuring GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl and the other GBrowse dependencies. If you haven't, please see the GBrowse HOWTO. During most of the tutorial, we will be using the "in-memory" GBrowse database (no relational database required! To introduce you to...

4

wolf snp database: 201 bp from chr1:3,362,913..3,363,113

http://browse2.big.ac.cn/cgi-bin/gb2/gbrowse/yeast_advanced

Dump selection as FASTA. Submit selection to UCSC BLAT. Submit selection to NCBI BLAST. Help with this browser. Show my user ID. Log in / create account. Wolf snp database: 201 bp from chr1:3,362,913.3,363,113. Download Decorated FASTA File. SNP@Evolution: Human Evolution GBrowser (HapMap Phase II B36). SNP@Evolution: Human Evolution GBrowser (HapMap Phase III B36). Show Active Tracks Only. Help with uploading custom tracks]. There are no tracks yet. Add custom tracks : [From text].

5

wolf snp database: 201 bp from chr1:3,362,913..3,363,113

http://browse2.big.ac.cn/gb2/gbrowse/yeast_renderfarm

Dump selection as FASTA. Submit selection to UCSC BLAT. Submit selection to NCBI BLAST. Help with this browser. Show my user ID. Log in / create account. Wolf snp database: 201 bp from chr1:3,362,913.3,363,113. Download Decorated FASTA File. SNP@Evolution: Human Evolution GBrowser (HapMap Phase II B36). SNP@Evolution: Human Evolution GBrowser (HapMap Phase III B36). Show Active Tracks Only. Help with uploading custom tracks]. There are no tracks yet. Add custom tracks : [From text].

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browse2.big.ac.cn

Generic Genome Browser

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. GBrowse documentation,...

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