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http://bsu.ncl.ac.uk/
Cutting-edge bioinformatics research and support
http://bsu.ncl.ac.uk/
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Home | bsu.ncl.ac.uk Reviews
https://bsu.ncl.ac.uk
Cutting-edge bioinformatics research and support
bsu.ncl.ac.uk
Services
http://bsu.ncl.ac.uk/support/services
Cutting-edge bioinformatics research and support. In addition to the skills listed on the “Expertise” page. The Bioinformatics Support Unit is able to offer the following range of services. High Throughput Sequencing Support. The unit is also responsible for the administration of the FMS bioinformatics cluster resource. See the wiki. For more information, and contact Ben Allen. The unit administers a site-wide licence for GeneSpring 13 GX microarray analysis software (suitable for analysis of Affymetrix,...
John Casement
http://bsu.ncl.ac.uk/support/staff/john-casement
Cutting-edge bioinformatics research and support. Having enjoyed a career which incorporated Technical Administration and teaching English in Japan, John joined Newcastle University as a mature student in 2009 to study for a Bachelor’s Degree in Mathematics, Statistics and Information Systems. After graduation, he sought to apply his analytical and programming skills in a biological context, which lead him to study for an MSc in Bioinformatics. To contact John, email john.casement@ncl.ac.uk.
Sirintra Nakjang
http://bsu.ncl.ac.uk/support/staff/sirintra-nakjang
Cutting-edge bioinformatics research and support. After completing an MRes in Bioinformatics at Newcastle University. Sirintra started her career in bioinformatics at the Wellcome Trust Sanger Institute. As a computer biologist maintaining an in-house genotyping analysis pipeline. She then returned to Newcastle to carry out her PhD under the supervision of Prof. Robert P. Hirt. And Prof. Anil Wipat. And Prof. Robert P. Hirt. 8217;s group in the Institute for Cell and Molecular Biosciences. Chaytor L, Gre...
Simon Cockell
http://bsu.ncl.ac.uk/support/staff/simon-cockell
Cutting-edge bioinformatics research and support. Simon Cockell has been the manager of the Bioinformatics Support Unit since July 2011. During this time, the importance of high-throughput approaches in biology has increased exponentially, and Simon has overseen a BSU that has quadrupled in size in order to meet these increasing demands. Simon trained as a molecular biologist, studying signal transduction regulation in. Development during his Ph.D. at Leicester University. Supported by the BBSRC. Hardyma...
Graham Smith
http://bsu.ncl.ac.uk/support/staff/graham-smith
Cutting-edge bioinformatics research and support. Computational modelling of the regulation of Insulin signalling by oxidative stress. GR Smith, DP Shanley. BMC systems biology 7 (1), 41, 2013. Systems modelling of NHEJ reveals the importance of redox regulation of Ku70/80 in the dynamics of dna damage foci. D Dolan, G Nelson, A Zupanic, G Smith, D Shanley PloS one 8 (2), e55190, 2013. GR Smith, DP Shanley PLoS One 5 (6), e11092, 2010. Prediction of protein protein interactions by docking methods. JD Far...
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Blog | Simon's Blog | A bioinformatician's (infrequent) musings
https://sjcockell.me/blog
A bioinformatician's (infrequent) musings. I posted this wondering on Twitter earlier today:. Is there a good current review of alignment methods for genome graphs? Simon Cockell (@sjcockell) February 22, 2016. Which elicited precisely no response. So I actually had to do my own research. This is the hacked together results of that hour or so. Presented on the grounds that it may help others, as well as being an. 2015) provide a more complete overview of the issues than I could hope to [1]. Despite this ...
About Me | Simon's Blog
https://sjcockell.me/about-me
A bioinformatician's (infrequent) musings. I’m Simon, a 36 year old husband, father and bioinformatician, in something approaching that order. I work at Newcastle University. Where I head the Bioinformatics Support Unit. I live in Gateshead with my wife and two sons, we enjoy visiting Washington Wildfowl and Wetland Trust. And Tynemouth Blue Reef Aquarium. Among other local sites. When we get the chance we scarper to explore the marvellous British countryside, from the Lake District. Where not ( Ubuntu.
Bioinformatics Community Building in Newcastle | Simon's Blog
https://sjcockell.me/2012/06/26/bioinformatics-community-building-in-newcastle
A bioinformatician's (infrequent) musings. Bioinformatics Community Building in Newcastle. Ooohhh look, a blog post. Not seen one of those in a while around these parts…. I’ve been rather busy since taking on my new job. Which I guess I should now refer to just as ‘my job’). Hence the lack of posts for quite some time. Mostly I’ve been focussed on making sure the Bioinformatics Support Unit. In the first Bioinformatics Special Interest Group meeting, we heard a talk from Dr Andrew “Harry” Har...Entitled ...
bioinformatics.knowledgeblog.org
Gene Set Enrichment Analysis | The Bioinformatics Knowledgeblog
http://bioinformatics.knowledgeblog.org/2011/06/20/gene-set-enrichment-analysis
A bioinformatics tutorial resource. On June 20, 2011 by Simon Cockell in Transcriptomics. Gene Set Enrichment Analysis. The enrichment analysis explored in the previous article. The most commonly used tool for Gene Set Enrichment Analysis is GSEA, developed by a team at the Broad Institute ( 10.1073/pnas.0506580102. GSEA requires the full data from a microarray experiment in a specific format. There are instructions for generating this format on the GSEA Wiki. Sourcecode language=”r”]. Enter the number o...
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Skip to main content. Bracken Library Self-Guided Tour with QR Codes (New! Tour for ENG 103 students. Bracken Library Self-Guided Tour. Tour for ENG 103 students. Online research skills tutorial for ENG 104 students. Use these guides to help you format citations. MLA Citation Style Guide. APA Citation Style Guide. AMA Citation Style Guide. Chicago Citation Style Guide. Bluebook Legal Citation Style Guide.
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Cutting-edge bioinformatics research and support. The Bioinformatics Support Unit at Newcastle University is based in the Medical School (William Leech Building). Our office and common user area can be found on the second floor of the Leech Building in room M2046/M2046A. Or you can call us on 0191 208 7253. We're always happy to discuss project ideas and design. William Leech Building, Framlington Place Newcastle-upon-Tyne, NE2 4HH UK. Icons made by Freepik. From www.flaticon.com.
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