CASSAVA.IGS.UMARYLAND.EDU

Cassava Web

A project funded by the Generation Challenge Programme. Of the Consultative Group on International Agricultural Research. GCP Project G3007.03. Development of Genomics Resources for Molecular Breeding of Drought Tolerance in Cassava". Showing the FPC fingerprint map of cassva inbred AM560-2, generated at UC Davis. A BLAST server including databases of Cassava ESTs. Assembled ESTs using DFCI's. And WGS reads from inbred AM560-2 generated by DOE-JGI. University of Maryland School of Medicine. Davis CA, USA.

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A project funded by the Generation Challenge Programme. Of the Consultative Group on International Agricultural Research. GCP Project G3007.03. Development of Genomics Resources for Molecular Breeding of Drought Tolerance in Cassava. Showing the FPC fingerprint map of cassva inbred AM560-2, generated at UC Davis. A BLAST server including databases of Cassava ESTs. Assembled ESTs using DFCI's. And WGS reads from inbred AM560-2 generated by DOE-JGI. University of Maryland School of Medicine. Davis CA, USA.

<META> KEYWORDS

1 cassava genome database

2 downloads

3 blast

4 gbrowse

5 introduction

6 funding

7 quick links

8 the gmod

9 generic genome browser

10 from genbank

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cassava genome database,downloads,blast,gbrowse,introduction,funding,quick links,the gmod,generic genome browser,from genbank,tgicl tool,investigators,principal investigator,pablo rabinowicz,co investigators,alexander myburg,department of genetics

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Cassava Web | cassava.igs.umaryland.edu Reviews

https://cassava.igs.umaryland.edu

A project funded by the Generation Challenge Programme. Of the Consultative Group on International Agricultural Research. GCP Project G3007.03. Development of Genomics Resources for Molecular Breeding of Drought Tolerance in Cassava". Showing the FPC fingerprint map of cassva inbred AM560-2, generated at UC Davis. A BLAST server including databases of Cassava ESTs. Assembled ESTs using DFCI's. And WGS reads from inbred AM560-2 generated by DOE-JGI. University of Maryland School of Medicine. Davis CA, USA.

INTERNAL PAGES

cassava.igs.umaryland.edu

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BLAST Search

http://cassava.igs.umaryland.edu/blast/blast.html

Choose program to use and database to search:. JGI Whole Genome Shotgun Sequences. Enter sequence below in FASTA. Or load it from disk. Results will open in new window. The query sequence is filtered. For low complexity regions by default. Mask for lookup table only. Query Genetic Codes (blastx only). Mold Mitochondrial; . (4). Ciliate Nuclear; . (6). Alternative Yeast Nuclear (12). Database Genetic Codes (tblast[nx] only). Mold Mitochondrial; . (4). Ciliate Nuclear; . (6). Alternative Yeast Nuclear (12).

2

Cassava Web

http://cassava.igs.umaryland.edu/cgi-bin/downloads.cgi

Right click on dataset name, and select. BAC end sequences, forward and reverse. ESTs available in GenBank. Contigs and singletons resulting from clustering and assembling Manihot esculenta. GenBank ESTs using the TGI Clustering tools (TGICL; http:/ compbio.dfci.harvard.edu/tgi. SNPs from physical map. SNPs derived from Cassava physical map. SNPs derived from genes. SNPs derived from genes annotated in the Cassava genome. 2009 - 2010 Institute for Genome Sciences.

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Cassava Web

A project funded by the Generation Challenge Programme. Of the Consultative Group on International Agricultural Research. GCP Project G3007.03. Development of Genomics Resources for Molecular Breeding of Drought Tolerance in Cassava". Showing the FPC fingerprint map of cassva inbred AM560-2, generated at UC Davis. A BLAST server including databases of Cassava ESTs. Assembled ESTs using DFCI's. And WGS reads from inbred AM560-2 generated by DOE-JGI. University of Maryland School of Medicine. Davis CA, USA.

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