murphylab.cbd.cmu.edu
Murphy Lab | Presentations
http://murphylab.cbd.cmu.edu/presentations
Center for Bioimage Informatics. Murphy Lab - Presentations. Slides from 2014 SCS IC. Slides from Keynote Address. Given at Center for Talented Youth event at the Lane Center for Computational Biology at Carnegie Mellon University, November 9, 2013. Slides from "Automated construction of generative models from time series cell images: Tools for more complete analysis of perturbagen effects". Given at High Content Analysis, January 11, 2012, San Francisco, California. From talk at the COMBINE 2011. Lectur...
murphylab.cbd.cmu.edu
Murphy Lab | Software
http://murphylab.cbd.cmu.edu/software
Center for Bioimage Informatics. Murphy Lab - Software. OMEROsearcher LocalClient v1.3. July 11, 2013]. September 30, 2013]. February 3, 2013]. OMEROsearcher Server v1.1.2. For OMERO version 4.3.3) [May 16, 2012]. PSLID and SLIC Software Distributions. Software from published papers (Reproducible Research Archives). Last Updated: 21 Oct 2013.
murphylab.cbd.cmu.edu
Murphy Lab | Services | SLIF
http://murphylab.cbd.cmu.edu/services/SLIF
Center for Bioimage Informatics. Center for Bioimage Informatics. And Departments of Biological Sciences. Pittsburgh, Pennsylvania, U.S.A. SLIF finds fluorescence microscope images in on-line journal articles, and indexes them according to cell line, proteins visualized, and resolution. Images can be accessed via the SLIF Web database. An on-line summary of the architecture of SLIF. Can be found here. On SLIF from the 2008 ISMB conference can be found on the Presentations page. Proceedings of the 2nd IEE...
murphylab.cbd.cmu.edu
Murphy Lab | Flow Cytometry
http://murphylab.cbd.cmu.edu/murphylab_flow.html
Center for Bioimage Informatics. Murphy Lab - Flow Cytometry. Includes an index to free analysis software). International Society for Analytical Cytology ( ISAC. Measuring pH of endocytic compartments. Has anyone used flow cytometry or sorting with individual vesicular organelles? Anyone used flow cytometry or sorting with individual vesicular organelles? Yes an annotated bibliography is included below. Proc Natl. Acad. Sci. U.S.A. Detection of endocytic vesicles using a fluorogenic substrate (Fig. 3).
compeau.cbd.cmu.edu
Jones & Pevzner Slides | Phillip Compeau
http://compeau.cbd.cmu.edu/teaching/jones-pevzner-slides
Assistant Department Head for Education. School of Computer Science. Jones & Pevzner Slides. 2016 by Phillip Compeau. Jones & Pevzner Slides. Here you can find links to slides accompanying. An Introduction to Bioinformatics Algorithms. By Neil C. Jones and Pavel A. Pevzner (The MIT Press, 2004). I have worked on editing these slides and have PowerPoint versions; if you are interested in using them, please get in touch. Edit Distance Part 1. Edit Distance Part 2. Divide and Conquer Algorithms.
compeau.cbd.cmu.edu
Lectures | Phillip Compeau
http://compeau.cbd.cmu.edu/programming-for-scientists/lectures
Assistant Department Head for Education. School of Computer Science. Jones & Pevzner Slides. 2016 by Phillip Compeau. Below, you can find a set of lectures from the most recent run of the undergraduate version of Programming for Scientists; these are subject to change. Computational Problems and Pseudocode. Recursion, Control Structures, and Summing Numbers. Finding Hidden Messages in DNA (sampled from Bioinformatics Algorithms: An Active Learning Approach. By Compeau and Pevzner). The Case for Pointers.
compeau.cbd.cmu.edu
Teaching | Phillip Compeau
http://compeau.cbd.cmu.edu/teaching
Assistant Department Head for Education. School of Computer Science. Jones & Pevzner Slides. 2016 by Phillip Compeau. As a teaching-track faculty member, I constantly seek ways to improve my teaching, from incorporating active learning and peer instruction in the classroom to finding the best ways in which online materials can inform offline education. Professional Issues in Computational Biology (02-602). A one-year seminar for students in the MS in Computational Biology. A course examining a variety of...
cs.cmu.edu
Eric Xing's home page
http://www.cs.cmu.edu/~epxing
Eric P. Xing, PhD, PhD. 8101 Gates-Hillman Center (GHC),. Pittsburgh, PA 15213. Email: epxing AT cs.cmu.edu. School of Computer Science. My principal research interests lie in the development of. Machine learning and statistical methodology. Large-scale computational system and architecture. For solving problems involving automated learning, reasoning, and decision-making in high-dimensional, multimodal, and dynamic possible worlds in artificial, biological, and social systems. Past Students and Postdocs:.
cs.cmu.edu
Christos Faloutsos
http://www.cs.cmu.edu/~christos
Dept of Computer Science. Pittsburgh, PA 15213-3891. 412-268.3505, GHC 8120. Email: [first-initial-and-her-last-name] AT cs DOT cmu DOT edu. If interested in grad studies, postdoc etc:. Thank you for your interest! If in the wait-list for 15-415/615. Again, thank you for your intersest! Electrical and Computer Engineering, CMU. PhD and M.Sc. (University of Toronto.);. BSc (Nat. Tech. U. Athens). And full CV in pdf. Customized for funding agencies, 2-page versions. Weekly schedule: see my. HCI:Small: Maki...
murphylab.cbd.cmu.edu
Murphy Lab | Data
http://murphylab.cbd.cmu.edu/data
Center for Bioimage Informatics. Murphy Lab - Data. 2D 3T3 RT Set3. 2D 3T3 RT Set4. Raw and processed image collections. 2D 3T3 RT Set1. 2D 3T3 RT Set2. 2D 3T3 and U20S segmented nuclei. UCSF yeast GFP images. ISMB 2007 Yeast Image Classification. Cytometry 2007 Generative Models. Images of T cells expressing different EGFP-tagged proteins collected by the Wülfing group as part of the following study. 2D images of 3T3 and U20S cells hand-segmented to show nuclear boundaries. S-C Chen, T. Zhao, G....The 2...
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