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Cell Illustartor - examples

http://www.cellillustrator.org/examples

Cell Illustrator 5.0. Cell Illustrator 4.0. Trial License - CI Pro. A highly valuable tool in helping to advance the research efforts undertaken here for the Visible CellTR project. It is a goal of the Visible CellTM project to map the output of Cell Illustrator onto a 3D physical model of the cell so that network models can be integrated and visualized said Professor Mark Ragan, the University of Queensland. Cell Illustrator can be used for:. Creating model diagrams of publication quality.

2

Cell Illustartor - key_features

http://www.cellillustrator.org/key_features

Cell Illustrator 5.0. Cell Illustrator 4.0. Trial License - CI Pro. Easy run from web browser on all universal platforms, e.g. Windows, Linux, Mac. SVG Library of biological elements. Properties of all model elements are tabulated and are easy to modify. Asocciate with external Databases. Integrated visualization mode for the analysis of Gene Relationship Networks. Import of SBML/CellML models and BioPAX/CSO ontologies. Whole pathways or single reactions can be imported from TRANSPATH database. Export th...

3

Cell Illustartor - simulation_engines

http://www.cellillustrator.org/simulation_engines

Cell Illustrator 5.0. Cell Illustrator 4.0. Trial License - CI Pro. Cell Illustrator (CI) allows researchers to simulate complex biological processes. The modeling and simulation engine of Cell Illustrator is based on an extension of the Petri-net methodology. Cell Illustrator offers two modes of simulation described below. Specify mathematical formulas for biochemical reactions. Define complex logic of the Petri-net by writing scripts. Test/run the simulation inside the CI workspace in an interactive way.

4

Cell Illustartor - home

http://www.cellillustrator.org/home

Cell Illustrator 5.0. Cell Illustrator 4.0. Trial License - CI Pro. Cell Illustrator 5.0. Cell Illustrator is a software tool that enables biologists to draw, model, elucidate and simulate complex biological processes and systems. It has outstanding drawing capabilities, moreover it allows researchers to model metabolic pathways, signal transduction cascades, gene regulatory pathways as well as dynamic interactions of various biological entities such as genomic DNA, mRNA and proteins.

5

Cell Illustartor - case_studies

http://www.cellillustrator.org/case_studies

Cell Illustrator 5.0. Cell Illustrator 4.0. Trial License - CI Pro. Cell Illustrator has been successfully utilized to model biological pathways like Circadian Rhythms of Drosophila, Glycolytic pathway and Fas ligand induced Apoptosis. Switching mechanism of lambda phage. Circadian rhythms in Drosophila. Circadian rhythms in Mus musculus. P53 (ARF-dependent stabilization pathway). P53 (CDK-dependent phosphorylation pathway). ASE cell fate simulation. Glycolytic pathway and lac operon of E. coli.

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