chasseur.usc.edu
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NAWS
http://chasseur.usc.edu/naws.html
Neuroscience Analysis Web Service (NAWS). The end-goal of representing knowledge in this system is to be able to analyze and understand it. A large number of different analysis programs exist within the open-source movements and it makes sense to find a way to access their functionality without having to program it within our application. We have developed a system called Neuroscience Analysis Web Services (NAWS, http:/ www.sourceforge.net/projects/naws. The NAWS client can be accessed here.
Sangam
http://chasseur.usc.edu/sangam.html
Lsquo;Sangam’ in Tamil stands for “a council of scholars”. It is based on the Proteus project ( http:/ dblab.usc.edu/WebServices/. Http:/ www.genome.jp/kegg/. And the National Cancer Institute’s Center for Bioinformatics (NCICB, http:/ ncicb.nci.nih.gov/. The Sangam demo can be accessed here.
VPDMf
http://chasseur.usc.edu/vpdmf.html
The VPDMf is the underlying framework on which the rest of the system has been buiilt. The VPDMf operates on a UML model, and then uses a locally defined ‘View Specification’ (an XML design conforming to our own internal specification) to encapsulate. For viewing. Additionally, the text processing capabilities of Perl allowed us to write a preliminary reverse engineering program that outperformed the reverse-engineering methods within Rational Rose for our source code. The VPDMf demo can be accessed here.
Neuart-II
http://chasseur.usc.edu/neuart2.html
The NeuARt II plug-in (named after a predecessor application NeuARt. Provides an interface modeled on neuroanatomical atlases. The aim of this project to provide an infrastructure for neuroscientists to use neuroanatomical atlases to refer to and map their data. This project has now been described in a paper (published online in BMC Bioinformatics. The project effort is also described in a recent ISI news article. Figure 1: Screenshot of the NeuARt application showing multiple injection sites of differen...
Articles
http://chasseur.usc.edu/neuroscholar.html
For more detailed statistics). Figure 1. Start Screen for NeuroScholar system. The left hand panel has two panes, the ‘definition’ pane which shows the schema of the system, and the ‘instance’ pane which displays the contents of the Knowledge Base (KB). When a view is retrieved and loaded into the system, its node and neighbors are displayed in the instance pane. Both graphs are dynamic and modifiable, and use the TouchGraph. Views), internal statements describing an experiment ( Experiment. Additional f...
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