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CHOYCE: Constraining HOmologY modelling with Cryo-Electron microscopy maps

Please address enquiries to. Key is available at MODELLER. Upload your sequence alignment and template structure file). Please make sure that the template sequence is the upper one in the alignment. Example. Please make sure that this is the structure file of the template sequence in the alignment. Please make sure that the template structure is fitted in the approximate position of your target protein in the density map. Number of models to build. Number of alignments to build. MRC/CCP4 or XPLOR format).

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CHOYCE: Constraining HOmologY modelling with Cryo-Electron microscopy maps | choyce.ismb.lon.ac.uk Reviews

<META> DESCRIPTION

Please address enquiries to. Key is available at MODELLER. Upload your sequence alignment and template structure file). Please make sure that the template sequence is the upper one in the alignment. Example. Please make sure that this is the structure file of the template sequence in the alignment. Please make sure that the template structure is fitted in the approximate position of your target protein in the density map. Number of models to build. Number of alignments to build. MRC/CCP4 or XPLOR format).

<META> KEYWORDS

1 resources

2 topf group

3 modeller

4 developed by

5 reda rawi

6 acknowledgments

7 maya topf

8 lee whitmore

9 choyce help

10 documentation

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resources,topf group,modeller,developed by,reda rawi,acknowledgments,maya topf,lee whitmore,choyce help,documentation,tutorial,user information,your e mail address,modeller license key,page,input data,input files,option 1,sequence alignment,fasta format

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CHOYCE: Constraining HOmologY modelling with Cryo-Electron microscopy maps | choyce.ismb.lon.ac.uk Reviews

https://choyce.ismb.lon.ac.uk

Please address enquiries to. Key is available at MODELLER. Upload your sequence alignment and template structure file). Please make sure that the template sequence is the upper one in the alignment. Example. Please make sure that this is the structure file of the template sequence in the alignment. Please make sure that the template structure is fitted in the approximate position of your target protein in the density map. Number of models to build. Number of alignments to build. MRC/CCP4 or XPLOR format).

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CHOYCE: Constraining HOmologY modelling with Cryo-Electron microscopy maps

http://choyce.ismb.lon.ac.uk/example.html

Please address enquiries to. Alignment fasta file example. 1FFT C 20-203 (template). DAGGTKIFGFWIYLMSDCILFSILFATY- -AVLVNGTAGG- -PTG-KDIFELPFVLVE TFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFI- -GMEIYEFHHLIVNGMG PDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDV VWICVFTVVYLMGA. 1OCC C 74-261 (target). AVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLN TSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGV- - - -YGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDV VWLFLYVSIYWWGS.

2

CHOYCE: Constraining HOmologY modelling with Cryo-Electron microscopy maps

http://choyce.ismb.lon.ac.uk/tutorial.html

Please address enquiries to. CHOYCE is used for:. Homology modelling of protein three-dimensional structures. Fitting three-dimensional structures (created in 1.) into a Cryo-Electron microscopy density map. This example will introduce the use of CHOYCE:. Is subunit III of bovine heart cytochrome c oxidase (PDB: 1OCC, Chain C, residues 74-261). Is E coli ubiquinol oxidase (PDB: 1FFT, chain C, residues 20-203). Target and template share a sequence identity of approx. 22%. Upload just the target. Subunit I...

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CHOYCE: Constraining HOmologY modelling with Cryo-Electron microscopy maps

Please address enquiries to. Key is available at MODELLER. Upload your sequence alignment and template structure file). Please make sure that the template sequence is the upper one in the alignment. Example. Please make sure that this is the structure file of the template sequence in the alignment. Please make sure that the template structure is fitted in the approximate position of your target protein in the density map. Number of models to build. Number of alignments to build. MRC/CCP4 or XPLOR format).

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