CIDARLAB.ORG

CIDAR at Boston University

CIDAR brings researchers, programmers,. And engineers together to create powerful tools. For building complex biological and electronic systems. Low Cost Droplet Microfluidics. Our wetlab team is producing a library of. Essential, well-characterized MoClo-format. Biology parts for rapid, reliable DNA assembly. CIDAR Lab is engineering protocols, CAD tools and low cost microfludic platforms to change the way we engineer microfluidics. CIDAR undergraduates work closely with. Photonics Building, Rm 209.

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CIDAR at Boston University | cidarlab.org Reviews

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CIDAR brings researchers, programmers,. And engineers together to create powerful tools. For building complex biological and electronic systems. Low Cost Droplet Microfluidics. Our wetlab team is producing a library of. Essential, well-characterized MoClo-format. Biology parts for rapid, reliable DNA assembly. CIDAR Lab is engineering protocols, CAD tools and low cost microfludic platforms to change the way we engineer microfluidics. CIDAR undergraduates work closely with. Photonics Building, Rm 209.

<META> KEYWORDS

1 tools

2 software overview

3 cello

4 clotho

5 double dutch

6 eugene

7 fluigi project

8 merlin

9 phagebook

10 phoenix

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tools,software overview,cello,clotho,double dutch,eugene,fluigi project,merlin,phagebook,phoenix,pigeon,puppeteer,raven,hummingbird,garuda,applications,applications overview,synthetic biology,microfluidics,publications,featured publications,archive,team

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CIDAR at Boston University | cidarlab.org Reviews

https://cidarlab.org

CIDAR brings researchers, programmers,. And engineers together to create powerful tools. For building complex biological and electronic systems. Low Cost Droplet Microfluidics. Our wetlab team is producing a library of. Essential, well-characterized MoClo-format. Biology parts for rapid, reliable DNA assembly. CIDAR Lab is engineering protocols, CAD tools and low cost microfludic platforms to change the way we engineer microfluidics. CIDAR undergraduates work closely with. Photonics Building, Rm 209.

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cidarlab.org

1

CIDAR at Boston University – Pigeon

http://cidarlab.org/pigeon

A Text-to-Image Generator for Synthetic Biological Devices. Pigeon is a Web-based tool that translates a textual description of a synthetic biology design into an image. It allows programmatic generation of design visualizations, is easy to learn, is easily extensible to new glyphs and notation, and can be connected to other software tools for visualizing their output. Click to visit the official Pigeon site. Convert textual device designs into standardized graphics. Recent news stories for Pigeon.

2

CIDAR at Boston University – Puppeteer

http://cidarlab.org/puppeteer

Laboratory Automation for Synthetic Biology. Puppeteer is a web-based planning and instruction generation tool which automates the task of DNA assembly by tracking, managing, and controlling laboratory tasks, reagents, and equipment. It is designed to translate protocols into sets of human- and machine-readable instructions, reducing the labor cost of building genetic devices. Track, manage, and control tasks, reagents, and equipment. Define protocols for carrying out laboratory processes. V Vasilev, C&#...

3

CIDAR at Boston University – Raven

http://cidarlab.org/raven

DNA Assembly Planning Made Easy. Raven is a DNA assembly planning tool that generates optimized assembly plans that minimize both the labor and reagent cost involved in constructing target DNA sequences from oligo- and plasmid-derived fragments. Raven is faster and more reliable than designing assembly plans by hand, freeing synthetic biologists from much of the effort and human-error involved in manual assembly planning. To generate device designs, and store them in Clotho. Program Manager: Linda Chrisey.

4

CIDAR at Boston University – Clotho

http://cidarlab.org/clotho

Store, Exchange, and Interact with Synthetic Biological Data. Clotho is a framework for engineering synthetic biological systems and managing the data used to create them. It serves as both a centralized location to store synthetic biological information — such as genetic parts, nucleic acid sequences, and physical samples– as well as a framework for applications (apps) which interact with said data. Click to visit the official Clotho site. Robust API for app development. Program Manager: Anne Maglia.

5

CIDAR at Boston University – Phoenix

http://cidarlab.org/phoenix

Design, Build, Test, Learn. Phoenix is a tool where users are guided through an iterative, hierarchical design-build-test cycle with sets of building and testing instructions. Given a functional specification and a structural specification, Phoenix helps break down the Structural Module, test available parts in the library, predict behavior using simulation tools, assign parts to the Genetic network and learn from results derived from empirical data. Verification of Structural Specification. Misc{Appleto...

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Speakers | BioBricks Foundation SB6.0: The Sixth International Meeting on Synthetic Biology

http://sb6.biobricks.org/speakers

About the SBx.0 Conference Series. About the BioBricks Foundation. Sponsorship, Exhibition and Advertising Opportunities. In addition to research and teaching in biological design, she blogs about synthetic biology’s history and future for. Design and Synthetic Biology: Connecting People and Technologies. Tue July 9 4:30 - 6:00 Plenary Session. Prototypes and provocations: imagining the future of synthetic biology. David Drubin et al. “Designing Biological Systems.”. As a model parasite and the construct...

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Cidar Labs – HoppingMedia

http://hopping.com/project/cidar-labs

BRAND / WEB DESIGN. The goal of Cidar Labs is to create software tools which make synthetic biology more effective by integrating concepts from electronic design automation into the specification, design, and assembly of complex biological systems. Somewhere out there, Tim Berners-Lee is proud. It’s important to remember that branding for research purposes is just as important as branding for retail purposes. Just because you’re giving something away doesn’t mean you should sacrific...

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CIDAR at Boston University

CIDAR brings researchers, programmers,. And engineers together to create powerful tools. For building complex biological and electronic systems. Low Cost Droplet Microfluidics. Our wetlab team is producing a library of. Essential, well-characterized MoClo-format. Biology parts for rapid, reliable DNA assembly. CIDAR Lab is engineering protocols, CAD tools and low cost microfludic platforms to change the way we engineer microfluidics. CIDAR undergraduates work closely with. Photonics Building, Rm 209.

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