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The circular RNA worldLatest in research from the circRNA world
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Latest in research from the circRNA world
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The circular RNA world | circrna.blogspot.com Reviews
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Latest in research from the circRNA world
circrna.blogspot.com
The circular RNA world: UROBORUS - New pipeline for Circular RNA detection from RNAseq data
http://circrna.blogspot.com/2016/07/uroborus-new-pipeline-for-circular-rna.html
The circular RNA world. Latest in research from the circRNA world. Saturday, 16 July 2016. UROBORUS - New pipeline for Circular RNA detection from RNAseq data. Song and and colleagues from the University of Southern California published a new circular RNA prediction algorithm. Song et al,. Nucl Acids Res. (2016) doi: 10.1093/nar/gkw075. First published online: February 11, 2016. CircNet: a database of circular RNAs derived from transcriptome sequencing data. Comparison of circular RNA prediction tools.
The circular RNA world: July 2016
http://circrna.blogspot.com/2016_07_01_archive.html
The circular RNA world. Latest in research from the circRNA world. Monday, 18 July 2016. CircNet: a database of circular RNAs derived from transcriptome sequencing data. Yu-Chen Liu and colleagues at the Institute of Bioinformatics and Systems Biology, National Chiao Tung University, HsinChu, Taiwan has created a unique web resource CircNet. Creation of this resource systematically utilized transcriptome sequencing data sets to identify the expression of circRNAs in 464 RNA-seq samples. Links to this post.
The circular RNA world: Software
http://circrna.blogspot.com/p/software.html
The circular RNA world. Latest in research from the circRNA world. Software for circular RNA Prediction. A software pipeline for finding circular RNAs from RNA-seq data, based on STAR. circRNA finder has the capacity to identify circRNAs with very proximal splice sites (below 100 bp). Https:/ github.com/orzechoj/circRNA finder. Python code to detect head-to-tail spliced (back-spliced) sequencing reads, indicative of circular RNA (circRNA) in RNA-seq data. Https:/ github.com/marvin-jens/find circ. Hansen ...
The circular RNA world: Home
http://circrna.blogspot.com/p/home.html
The circular RNA world. Latest in research from the circRNA world. Subscribe to: Posts (Atom). CircNet: a database of circular RNAs derived from transcriptome sequencing data. Yu-Chen Liu and colleagues at the Institute of Bioinformatics and Systems Biology, National Chiao Tung University, HsinChu, Taiwan has crea. Comparison of circular RNA prediction tools. Hansen and colleagues at the Aarhus University in Denmark compares five popular algorithms for the prediction of circular RNA candidates. Th.
The circular RNA world: Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos
http://circrna.blogspot.com/2016/07/single-cell-rna-seq-transcriptome.html
The circular RNA world. Latest in research from the circRNA world. Saturday, 16 July 2016. Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos. Genome Biol. 2015; 16(1): 148. Published online 2015 Jul 23. CircNet: a database of circular RNAs derived from transcriptome sequencing data. Yu-Chen Liu and colleagues at the Institute of Bioinformatics and Systems Biology, National Chiao Tung University, HsinChu, Taiwan has crea. Comparison of circular RNA pre...
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The circular RNA world
The circular RNA world. Latest in research from the circRNA world. Monday, 18 July 2016. CircNet: a database of circular RNAs derived from transcriptome sequencing data. Yu-Chen Liu and colleagues at the Institute of Bioinformatics and Systems Biology, National Chiao Tung University, HsinChu, Taiwan has created a unique web resource CircNet. Creation of this resource systematically utilized transcriptome sequencing data sets to identify the expression of circRNAs in 464 RNA-seq samples. Links to this post.
circBase
Jul 2017 - Maass et al. Dec 2015 - Ashwal-Fluss et al. Jun 2015 - Ivanov et al. May 2015 - Rybak-Wolf et al. Human and mouse CNS samples. Thousands of circular RNAs (circRNAs) have recently been shown to be expressed in eukaryotic cells [ Salzman et al. 2012. Jeck et al. 2013. Memczak et al. 2013. Salzman et al. 2013. Here you can explore public circRNA datasets and download the custom python scripts needed to discover circRNAs in your own (ribominus) RNA-seq data. Export tables in a variety of formats.
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