CITRUS.HZAU.EDU.CN

Orange (Citrus sinensis) Genome Annotation Project

Introduction to this Project. Is one of the most important and widely grown fruit crop in the world, with global production of 122.3 million tons and total acreage of 8.9 million hectares in 2009 (FAOSTAT data, 2011), both ranking firstly among all the fruit crops. Citrus. Is a large genus with more than 10 major species. Among them, sweet orange is responsible for about 60% of Citrus. Production used both as fresh fruit and processed juice. Epub 2012 Nov 25. Epub 2013 Jul 19. 3 Jia Wang#, Di-Jun Chen#, ...

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Orange (Citrus sinensis) Genome Annotation Project | citrus.hzau.edu.cn Reviews

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Introduction to this Project. Is one of the most important and widely grown fruit crop in the world, with global production of 122.3 million tons and total acreage of 8.9 million hectares in 2009 (FAOSTAT data, 2011), both ranking firstly among all the fruit crops. Citrus. Is a large genus with more than 10 major species. Among them, sweet orange is responsible for about 60% of Citrus. Production used both as fresh fruit and processed juice. Epub 2012 Nov 25. Epub 2013 Jul 19. 3 Jia Wang#, Di-Jun Chen#, ...

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1 gene search

2 blast

3 gbrowse

4 pathway

5 downloads

6 news

7 citrus

8 the citrus sinensis

9 publications

10 csidb updates

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Orange (Citrus sinensis) Genome Annotation Project | citrus.hzau.edu.cn Reviews

https://citrus.hzau.edu.cn

Introduction to this Project. Is one of the most important and widely grown fruit crop in the world, with global production of 122.3 million tons and total acreage of 8.9 million hectares in 2009 (FAOSTAT data, 2011), both ranking firstly among all the fruit crops. Citrus. Is a large genus with more than 10 major species. Among them, sweet orange is responsible for about 60% of Citrus. Production used both as fresh fruit and processed juice. Epub 2012 Nov 25. Epub 2013 Jul 19. 3 Jia Wang#, Di-Jun Chen#, ...

INTERNAL PAGES

citrus.hzau.edu.cn

1

Orange (Citrus sinensis) Genome Annotation Project

http://citrus.hzau.edu.cn/orange/index.php

Introduction to this Project. Is one of the most important and widely grown fruit crop in the world, with global production of 122.3 million tons and total acreage of 8.9 million hectares in 2009 (FAOSTAT data, 2011), both ranking firstly among all the fruit crops. Citrus. Is a large genus with more than 10 major species. Among them, sweet orange is responsible for about 60% of Citrus. Production used both as fresh fruit and processed juice. Epub 2012 Nov 25. Epub 2013 Jul 19. 3 Jia Wang#, Di-Jun Chen#, ...

2

PPI: Orange Genome Annotation Project

http://citrus.hzau.edu.cn/orange/ppi/index.php

Protein-protein interactions (PPIs) play important roles in many molecular processes in the cell. We employ ortholog-based and domain-based methods to predict PPI network in sweet orange. The final PPI network, CitrusNet, contains 8,195 proteins with 124,491 interactions (Chang et al., submitted). Users can Search a Protein they are interested in, and obtain its interacting proteins. Version CsiDB201301, released Jun. 10th, 2013.You are the 215235th. Email: bioinfo@mail.hzau.edu.cn.

3

BLAST - Orange Genome Annotation Project

http://citrus.hzau.edu.cn/cgi-bin/orange/blast

BLASTN: NT query, NT db. BLASTP: AA query, AA db. BLASTX: NT query, AA db. TBLASTN: AA query, NT db. TBLASTX: NT query, NT db (All 6 Frames). Version CsiDB201301, released Jun. 10th, 2013. Email: bioinfo@mail.hzau.edu.cn.

4

Citrus sinensis Database: 7.001 kbp from chr1:5,628,000..5,635,000

http://citrus.hzau.edu.cn/cgi-bin/gb2/gbrowse/orange

Orange Genome Annotation Project. Help with this browser. Show my user ID. Log in / create account. Citrus sinensis Database: 7.001 kbp from chr1:5,628,000.5,635,000. Download Decorated FASTA File. Show 7.001 kbp. Show Active Tracks Only. Calus, RCC002 RNA-PETs. Fruit, RCY002 RNA-PETs. Flower, RCF002 RNA-PETs. Leaf, RCL004 RNA-PETs. RCC001, Calus (SOLiD, Density, BioScope). RCL003, Leaf (SOLiD, Reads, BioScope). RCM002, Mixture2 (Illumina, XY plot, Tophat). RCC001, Calus (SOLiD, Reads, BioScope). Highlig...

5

Document: Orange Genome Annotation Project

http://citrus.hzau.edu.cn/orange/document/news.php

What's New - CsiDB Project. Some modify about the display of "BLAST" and "Gene Search". We have added the corresponding expression levels to genes involved in PPIs and metabolic pathways. We have integrated the Gene Search and PPI search page, and metabolic pathways for sweet orange genome, and updated the CAP database to Version 2.0. The metabolic pathways are added to CAP. Protein-protein interaction data is added to the website. GBrowse Version 1.8 is updated to V2.4.

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Orange (Citrus sinensis) Genome Annotation Project

Introduction to this Project. Is one of the most important and widely grown fruit crop in the world, with global production of 122.3 million tons and total acreage of 8.9 million hectares in 2009 (FAOSTAT data, 2011), both ranking firstly among all the fruit crops. Citrus. Is a large genus with more than 10 major species. Among them, sweet orange is responsible for about 60% of Citrus. Production used both as fresh fruit and processed juice. Epub 2012 Nov 25. Epub 2013 Jul 19. 3 Jia Wang#, Di-Jun Chen#, ...

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