CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation and data extraction, its relevance to the community, the quality and detail of the stored data and the up-to-date nature of the stored information.
http://www.collectf.org/
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CollecTF homepage | collectf.org Reviews
https://collectf.org
CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation and data extraction, its relevance to the community, the quality and detail of the stored data and the up-to-date nature of the stored information.
collectf.org
CollecTF homepage
http://www.collectf.org/browse/cite
If you use CollecTF in your research, please cite any of the following:. Kılıç, S., White, E. R., Sagitova, D. M., Cornish, J. P., and Erill, I. (2013). CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria. Nucleic Acids Research. 42 (D1): D148-D155 doi:10.1093/nar/gkt1087 PubMed Link. Erill, I. (2015). Every Site Counts: Submitting Transcription Factor-Binding Site Information through the CollecTF Portal. Journal of Bacteriology.
CollecTF homepage
http://www.collectf.org/browse/feedback
Have comments, suggestions. Is there anything new or different that you would like to see on CollecTF? We are all ears to ways of improving CollecTF. Please give us your feedback. CollecTF is committed to maintaining the highest quality standards on the accuracy of reported information. If you spot an error in reported TF-binding sites, definitions or evidence for experimental support, please let us know. Please send comments to collectfdb@umbc.edu. For feedback or bug/errors, you can use the form here.
CollecTF homepage
http://www.collectf.org/browse/compare
CollecTF allows users to perform pair-wise comparisons of arbitrary searches on the database. Query results can be compared using site- and motif- based statistics relying on dynamic alignment of query results and contextualized using permutation tests. Click here to perform a comparative query. Please send comments to collectfdb@umbc.edu. For feedback or bug/errors, you can use the form here.
CollecTF homepage
http://www.collectf.org/browse/about
CollecTF, a play on words using the French collectif [collective] and the acronym for transcription factor [TF], is a database of transcription factor binding sites (TFBS) in the Bacteria domain. CollecTF aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation and data extraction, its relevance to the community, the quality and detail of the stored data and the up-to-date nature of the stored information. Reported binding sites are mapped to NCBI RefSeq.
LexA,LexA regulon and binding site collection in Mycobacterium tuberculosis H37Rv,Mycobacterium tuberculosis H37Rv
http://www.collectf.org/browse/view_motif_reports_by_TF_and_species/1/25
LexA - UniProtKB: I6Y1J7. Regulon and binding site collection of Mycobacterium tuberculosis H37Rv. Sites are listed as curated. Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA. For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites. Both positively and negatively regulated genes. Genes with unspecified type of regulation. Reporter assay using...
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dbxref.txt
http://www.uniprot.org/docs/dbxref
Xd; p An evidence describes the source of an annotation, e.g. an experiment that has been published in the scientific literature, an orthologous protein, a record from another database, etc. /p p a href="/manual/evidences" More /a /p. Help pages, FAQs, UniProtKB manual, documents, news archive and Biocuration projects. Protein sets from fully sequenced genomes. Systems used to automatically annotate proteins with high accuracy:. UniRule (Expertly curated rules). SAAS (System generated rules). Cat :...
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CollecTF homepage
CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation and data extraction, its relevance to the community, the quality and detail of the stored data and the up-to-date nature of the stored information. A record from CollecTF View full record. Protein record at UniProtKB. Genome record at NCBI. Please send comments to collectfdb@umbc.edu.
CollecTF: a database of transcription factor binding sites
CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation and data extraction, its relevance to the community, the quality and detail of the stored data and the up-to-date nature of the stored information. A record from CollecTF View full record. Please send comments to collectfdb@umbc.edu. For feedback or bug/errors, you can use the form here.
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