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*** chromosomes, and TILLING. The Genome Center at the University of California, Davis invites applications from qualified candidates for a Junior Specialist position, to become a part of a multinational team aimed at developing novel and effective genetic approaches for tomorrow agriculture in developing Africa. Work at UC Davis uses the model plant Arabidopsis to develop and characterize novel chromatin genes for manipulation of chromosome segregation. Click here for Comai Lab News! The Britt Lab (Sund...

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*** chromosomes, and TILLING. The Genome Center at the University of California, Davis invites applications from qualified candidates for a Junior Specialist position, to become a part of a multinational team aimed at developing novel and effective genetic approaches for tomorrow agriculture in developing Africa. Work at UC Davis uses the model plant Arabidopsis to develop and characterize novel chromatin genes for manipulation of chromosome segregation. Click here for Comai Lab News! The Britt Lab (Sund...
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Comaiwiki | comailab.genomecenter.ucdavis.edu Reviews

https://comailab.genomecenter.ucdavis.edu

*** chromosomes, and TILLING. The Genome Center at the University of California, Davis invites applications from qualified candidates for a Junior Specialist position, to become a part of a multinational team aimed at developing novel and effective genetic approaches for tomorrow agriculture in developing Africa. Work at UC Davis uses the model plant Arabidopsis to develop and characterize novel chromatin genes for manipulation of chromosome segregation. Click here for Comai Lab News! The Britt Lab (Sund...

INTERNAL PAGES

comailab.genomecenter.ucdavis.edu comailab.genomecenter.ucdavis.edu
1

Courses - Comaiwiki

http://comailab.genomecenter.ucdavis.edu/index.php/Courses

BIS2A, Introduction to Biology, Spring 2013 - See Smartsite. Genetics Graduate Group 201B, Fall 2008 - Genomics. Introductory Biology BIS2A, Spring 2008. Plant Biology 292, Spring 2007. BIS2A, Introduction to Biology, Spring 2013 - See Smartsite. The BIS2A Genome Project. Genetics Graduate Group 201B, Fall 2008 - Genomics. Plant Biology 292, Spring 2007. Graduate seminar for incoming students. Retrieved from " http:/ comailab.genomecenter.ucdavis.edu/index.php? Centromeres, Simon Chan.

2

People - Comaiwiki

http://comailab.genomecenter.ucdavis.edu/index.php/People

Lab Picture 2016 (a few people are missing). Mohan Prem Anand Marimuthu. Computational Biology and Bioinformatics. Lab Picture Nov. 2012. Lab Picture 2016 (a few people are missing). Web of science ID. Mohan Prem Anand Marimuthu. Computational Biology and Bioinformatics. Lab Picture Nov. 2012. Retrieved from " http:/ comailab.genomecenter.ucdavis.edu/index.php? Centromeres, Simon Chan. Videos on sequence analysis.

3

Video - Comaiwiki

http://comailab.genomecenter.ucdavis.edu/index.php/Video

The Y adapter for Illumina sequencing with a custom barcode (violet). Instructional Videos For Next Generation Sequence Analysis. A project by Dr. David Coil, the Comai Lab. And the UCD Genome Center. Around 2007, the advent of next generation sequencing opened a new approach to biology. These sequencing techniques, such as 454. Are able to produce vast amounts of sequence for a relatively low cost. The sheer volume of DNA data produced by this method can be intimidating. Using the Terminal (4 Videos).

4

Data methods - Comaiwiki

http://comailab.genomecenter.ucdavis.edu/index.php/Data_methods

This page summarizes the methods and data available from the Comai lab. TILLING and High throughput sequencing. Custom barcoding for Illumina and Illumina barcoded reads pipeline. Genotyping and mutation discovery. Exome capture: genotyping and mutation discovery. Discover CNV in genomes (a Matt Porter and Korf lab collaboration). Functional genomics of plant polyploids: NSF DBI 0733857. Protein Family Data Files. TILLING and High throughput sequencing. Bioinformatics pipeline for mutation discovery.

5

Lab Meeting - Comaiwiki

http://comailab.genomecenter.ucdavis.edu/index.php/Lab_Meeting

Schedule of lab meeting. Previous Lab Meeting Schedules. Britt and Comai Joint Lab Meetings Mondays. 45 Min. Talk. 5 min Talk 1. 5 min Talk 2. Plant Biology Fall Colloquium. Retrieved from " http:/ comailab.genomecenter.ucdavis.edu/index.php? Centromeres, Simon Chan. Videos on sequence analysis. This page was last modified on 14 July 2016, at 12:55. This page has been accessed 113,953 times.

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plb.ucdavis.edu plb.ucdavis.edu

Faculty - Plant Biology

http://www.plb.ucdavis.edu/faculty

Skip directly to: Main page content. Plant Anatomy Image Database. College of Biological Sciences. Univ of California, Davis. Davis, CA 95616. Dr Brady’s lab focuses on analysis of transcriptional networks that regulate tissue development using a systems biology approach. Professor and Vice Chair. Dr Britt’s lab focuses on DNA repair, damage response, and recombination in plants. Dr Liu's research involves:. Dr Sinha's lab uses Genetics, Developmental Biology and Genomics to answer questions relating to ...

tilling.ucdavis.edu tilling.ucdavis.edu

How to Place an Order - Tilling

http://tilling.ucdavis.edu/index.php/How_to_Place_an_Order

Create a Billing Profile. Optional - Alternative Primer Sets. To express your interest in TILLING. In the e-mail, please let us know whether you are affiliated with UCD, non-profit, or industry. This will affect the rates selected for billing. We will set up a TILLING account for you to place orders on our ordering page. Create a Billing Profile. Create a billing profile at the Genome Center Core Services page. After you have your login, you can go to our order page. To submit an order. We are currently ...

tilling.ucdavis.edu tilling.ucdavis.edu

NSF Award Information - Tilling

http://tilling.ucdavis.edu/index.php/NSF_Award_Information

DBI-0822383. TRPGR:Efficient identification of induced mutations in crop species by ultra-high throughput DNA sequencing. Improve the efficiency of mutation discovery (UCD). Develop protocols that combine oligo capture of barcoded superpooled samples with Solexa sequencing for efficient mutation detection (FHCRC). Devise the optimal target number and pooling for mutation discovery, and the informatic pipeline for analysis (UCD). Define and optimize approaches for TILLING polyploid genomes (UCD).

tilling.ucdavis.edu tilling.ucdavis.edu

Frequently Asked Questions - Tilling

http://tilling.ucdavis.edu/index.php/Frequently_Asked_Questions

How long will it take? Once our queue is filled, about 3-6 months. Depending on the wait list for our HiSeq2000, it could take longer. Sequencing itself takes a full month. What is a queue? We need to have enough orders before we can start processing orders. Our queue is 20-30 orders. In the event where we do not have many orders, we may be able to offer a smaller screening option. The screen size options will range from units of 512 individuals and the prices will be adjusted proportionately. Can I subm...

tilling.ucdavis.edu tilling.ucdavis.edu

Other Tilling Projects - Tilling

http://tilling.ucdavis.edu/index.php/Other_Tilling_Projects

TILLING PROJECTS IN OTHER LABORATORIES. University of Bristish Columbia. Links at UC Davis. UC Davis Genome Center. Section of Plant Biology. Retrieved from " http:/ tilling.ucdavis.edu/index.php? How to Place an Order. TILLING at Other Sites. This page was last modified on 4 November 2014, at 17:09. This page has been accessed 9,104 times. Funding provided by the National Science Foundation. Plant Genome Project Program (Project # 0077774).

tilling.ucdavis.edu tilling.ucdavis.edu

Arabidopsis TILLING - Tilling

http://tilling.ucdavis.edu/index.php/Arabidopsis_TILLING

Results with 4x arabidopsis population. We provide two populations to TILL arabidopsis.The first (being implemented) is the diploid A. thaliana population developed by STP in Seattle. The second is a tetraploid population developed at UCD. The choice of system should be helped by the description below. This is the well proven population. From which almost 10,000 mutations. The DNA is being rearrayed to fit the 3D-pooling. Mutant -/-/ / x diploid /. F1 -/ / x diploid /. We have a set of over 500 lines&#46...

ionomics.blogspot.com ionomics.blogspot.com

Ionomics Blog: New Perspective in Science

http://ionomics.blogspot.com/2012/06/new-perspective-in-science.html

The latest news about the ionomics project and thoughts from team members. Thursday, June 28, 2012. New Perspective in Science. Brian Dilkes and I have a perspective in the new issue of Science titled ". Elemental Profiles Reflect Plant Adaptations to the Environment. Elizabeth Buescher, Nancy Emery. Joanna Dinsmore, Luca Comai. Aimee Terauchi, Greg Ziegler and five anonymous reviewers for comments on the perspective. . Subscribe to: Post Comments (Atom). New Perspective in Science. New Paper in PLoS ONE.

tilling.ucdavis.edu tilling.ucdavis.edu

Publications - Tilling

http://tilling.ucdavis.edu/index.php/Publications

Tsai H et al. (2013) Production of a High-Efficiency TILLING Population through Polyploidization. Plant Physiol. Tsai H et al. (2011) Discovery of rare mutations in populations: TILLING by sequencing. Plant Physiol. Uauy C et al. (2009) A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat. BMC Plant Biol. Cooper JL et al. (2008) TILLING to detect induced mutations in soybean. BMC Plant Biol. Greene EA et al. (2003) Spectrum of chemically induced mutations from a l...

bsc2010.bioinformatics.ucdavis.edu bsc2010.bioinformatics.ucdavis.edu

Speakers « UC Davis Bioinformatics Core – 2010 Bioinformatics Short Course

http://bsc2010.bioinformatics.ucdavis.edu/about/speakers

Presented by the University of California, Davis Bioinoformatics Core. Transportation & Parking Services. Amazon Cloud Computing Course Materials. Amazon Cloud Computing Hands-on. Next-Generation Sequencing Course Materials. Professor: UC Davis Department of Chemistry. Web: chemgroups.ucdavis.edu/ beal. Lead Applications Developer: UC Davis Bioinformatics Core. Web: bioinformatics.ucdavis.edu. Bioinformatics Analyst: UC Davis Bioinformatics Core. Web: bioinformatics.ucdavis.edu. Web: comailab.genomec...

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Comaiwiki

Sex chromosomes, and TILLING. The Genome Center at the University of California, Davis invites applications from qualified candidates for a Junior Specialist position, to become a part of a multinational team aimed at developing novel and effective genetic approaches for tomorrow agriculture in developing Africa. Work at UC Davis uses the model plant Arabidopsis to develop and characterize novel chromatin genes for manipulation of chromosome segregation. Click here for Comai Lab News! The Britt Lab (Sund...

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