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The CompBio DudeBiology from the Computational Point of View
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The CompBio Dude | compbiodude.blogspot.com Reviews
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Biology from the Computational Point of View
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The CompBio Dude: April 2008
http://compbiodude.blogspot.com/2008_04_01_archive.html
Biology from the Computational Point of View. Monday, April 14, 2008. Python Blast SAX example. For the times when you have very large XML formatted Blast output files (use the -m7 option at run time), you can use a SAX python parser to read out the files. Import xml.sax.saxutils. Import xml.sax.xmlreader. Def get def id(a):. Return (re.compile(r' s ').split(a) [0]. Class BlankEntityHandler( xml.sax.handler.EntityResolver):. Def resolveEntity( self, publicId, systemId):. If name = "Hsp":. SelfcurQueryLen...
The CompBio Dude: March 2007
http://compbiodude.blogspot.com/2007_03_01_archive.html
Biology from the Computational Point of View. Thursday, March 15, 2007. Folding@Home on the PS3. Looks like Stanford's Folding at Home. Project is getting added into the Playstation3. This is pretty cool. Follow the link for videos. Anyway, here is some Youtube video of Folding@home on the PS3. Posted by Compbio Dude. Subscribe to: Posts (Atom). Folding@Home on the PS3.
The CompBio Dude: October 2006
http://compbiodude.blogspot.com/2006_10_01_archive.html
Biology from the Computational Point of View. Friday, October 20, 2006. Spent today re-familiarizing myself with the power combo of Bison. Maybe because I'm a masochist, maybe cause I wanted to prove that CS class in programming languages, where we learned how to design compilers, was useful. You can find nice little example at http:/ marvin.ibest.uidaho.edu/ heckendo/CS445/bison.html. Plus, I figure if I write this well enough, I can use it again later for other stuff. Posted by Compbio Dude.
The CompBio Dude: Complete Genomics
http://compbiodude.blogspot.com/2009/01/complete-genomics.html
Biology from the Computational Point of View. Sunday, February 01, 2009. Looks like we'll be seeing more human genome information in the near future. Complete Genomics Inc. Plans to sequence 1000 genomes this year, and 20,000 in 2010. This research sounds similar to the Personal Genomes Project. It's a corporate effort, so individual researchers probably won't see the data ( visit NCBI if you want some free data. They plan to present the results of their initial analysis in February. MOUNTAIN VIEW, Calif.
The CompBio Dude: The complexity of Life
http://compbiodude.blogspot.com/2009/07/complexity-of-life.html
Biology from the Computational Point of View. Wednesday, July 08, 2009. The complexity of Life. Three teams of scientists published three massive studies in Nature on the genes behind schizophrenia. They scanned thousands of people to find variants of genes that tended to show up more in people with schizophrenia than in those without it. And they found a heap of genes. There are thousands of different variants that each may raise your risk of schizophrenia by a tiny amount. Posted by Compbio Dude.
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Computational Biology Research Lab, Home Page
Istvan (Steve) Ladunga, Ph.D. Professor of Computational Biology, E145 Beadle Center. At the University of Nebraska-Lincoln. Our Laboratory conducts research in the computational aspects of:. Reconstructing transcriptional regulatory networks in algae and S. cerevisiae. Carbon dioxide concentration mechanisms in algae. Transcriptional Competency of Nucleosomes. In these works, we utilize existing methods and develop new ones in:. Transcription factor binding site predictions,. Machine learning, and.
Huang Research Group at HKUST Main/Home Page
Huang Research Group at HKUST. The main goal of our lab is to understand and manipulate functional conformational changes of complex biological systems by developing and applying novel computational tools which bridge the gap between experiments and simulations. Examples of our interested research. Areas include protein misfolding and aggregation, functional conformational changes in Transcription, and the development of Kinetic Network Models for long timescale dynamics. Farewell to Guo and Xu! Congs on...
Yan Cui's Lab at University of Tennessee Health Science Center
Database, Web Server and Software. Research Interests and Selected Publications. Systems Genetics and Network Biology. Li H, Lu L, Manly KF, Chesler EJ, Bao L, Wang J, Zhou M, Williams RW and Cui Y (2005) Inferring Gene Transcriptional Modulatory Relations: A Genetical Genomics Approach. Li H, Chen H, Bao L, Manly KF, Chesler EJ, Lu L, Wang J, Zhou M, Williams RW and Cui Y (2006) Integrative Genetic Analysis of Transcription Modules: Towards Filling the Gap between Genetic Loci and Inherited Traits.
Graduate Study in Comparative Biochemistry
Computational Chemistry and Biochemistry
This site is dedicated to computational chemistry and biochemstry.
The CompBio Dude
Biology from the Computational Point of View. Tuesday, July 28, 2009. More Jython and BioJava. The exploration of how it use BioJava with Jython I've written up an example that takes a Genpept file. An does alignments (both NeedlemanWunsch and SmithWaterman) against every Coding feature in a Genebank file. CDS sequences are kept in the Annotations of Features. If you read the straight sequence from the Genebank file, you will get the DNA of the chromosome. From java.io import *. Column uses minimum score.
The CompBio Experiment
Information Gathering Form End-Users. Information Gathering Form for Expertise Providers. Information Gathering Form for Resource Providers. Information Gathering Form for Software Providers. Technical Computing at Your Fingertips, the next Utility? This is an open invitation to members of the Life Sciences. Community to join us for a 3-month experiment, where we will apply the cloud computing service model to workloads on remote Cluster Computing resources in the areas of bio, pharma, and chemistry.
Richard D. BerlinCenter for Cell Analysis & Modeling › University of Connecticut Health Center
Richard D. Berlin. Center for Cell Analysis and Modeling. 16th Annual Virtual Cell Short Course. June 22-24, 2015. The Richard D. Berlin Center for Cell Analysis and Modeling (CCAM),. At the University of Connecticut Health Center, is developing new approaches for in vivo measurements and manipulation of molecular events within the cell, and new computational approaches to organize such data into quantitative models. Model - develop new methods for spatial modeling of biological systems.
最短で稼げる福岡の出稼ぎ求人
1月 8th, 2015 Author: admin. 1月 8th, 2015 Author: admin. 1月 8th, 2015 Author: admin.
compBiomeBlog
Snippets of Computational Biology, Bioinformatics, Productivity and the like. Thursday, 15 May 2014. Geeknote - Command line interface for Evernote. I have been using Evernote for several years and have been a premium member since 2011 as I was using it so much before then. I use it for work and for home, for recipes and for code, for pretty much everything. I use a modified version of The Secret Weapon. For tracking tasks and priorities. I also use IFTTT. Then I found evernote-mode. For emacs and though...
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