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BioCode's Notes

A blog about compoutational proteomics, bioinformatics, mass spectrometry, programming, Java development.

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BioCode's Notes | computationalproteomic.blogspot.com Reviews
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A blog about compoutational proteomics, bioinformatics, mass spectrometry, programming, Java development.
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1 biocode's notes
2 pages
3 software and tools
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6 polls
7 books and thesis
8 about me
9 publicado por
10 yasset perez riverol
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BioCode's Notes | computationalproteomic.blogspot.com Reviews

https://computationalproteomic.blogspot.com

A blog about compoutational proteomics, bioinformatics, mass spectrometry, programming, Java development.

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1

BioCode's Notes: June 2015

http://computationalproteomic.blogspot.com/2015_06_01_archive.html

Computational Proteomics and Bioinformatics. Monday, 8 June 2015. First tweet with more than 1k rt and my post with more than 5k. Happy to see my first post with more than 5k visits:. Introduction to Feature selection for bioinformaticians using R, correlation matrix filters, PCA and backward selection. And my first tweet with more than 1k RTs:. Brilliant pic.twitter.com/dvOUhUb5k6. 8212; Yasset Perez-Riverol (@ypriverol) May 26, 2015. Thanks to my Readers. Monday, June 08, 2015. Where is the information?

2

BioCode's Notes: A Trans-Proteomic Pipeline (TPP) Docker container

http://computationalproteomic.blogspot.com/2015/05/a-trans-proteomic-pipeline-tpp-docker.html

Computational Proteomics and Bioinformatics. Sunday, 10 May 2015. A Trans-Proteomic Pipeline (TPP) Docker container. In my initial post in this blog, I will teach you how to use a Docker container with the Trans-Proteomic Pipeline software installation. Docker is a great new technology that allows us to create GNU/Linux containers with specific software inside. All kinds of software can be "containerized", including ones that rely on graphical user interfaces. Unfortunately, if you are a GNU/Linux user (...

3

BioCode's Notes: One step ahead in Bioinformatics using Package Repositories

http://computationalproteomic.blogspot.com/2013/10/one-step-ahead-in-bioinformatics-using.html

Computational Proteomics and Bioinformatics. Monday, 28 October 2013. One step ahead in Bioinformatics using Package Repositories. About a year ago I published a post about in-house tools in research. Or Molecular Cell Proteomics. Whose editorial staffs are –and rightly so- more concerned about quality issues involving raw data and experimental reproducibility, but in instances like Bioinformatics. Quality of the documentation, in terms of examples, use cases and in-code comments (functions, classes).

4

BioCode's Notes: My List of Most Influential Authors in Computational Proteomics (according to Articles References, Google Scholar, twitter, Linkedin, Microsoft Academic Search and ResearchGate)

http://computationalproteomic.blogspot.com/2013/10/my-list-of-most-influential-authors-in.html

Computational Proteomics and Bioinformatics. Wednesday, 9 October 2013. My List of Most Influential Authors in Computational Proteomics (according to Articles References, Google Scholar, twitter, Linkedin, Microsoft Academic Search and ResearchGate). Home Page of ResearchGate with more than 3 millions of users. Number of published manuscripts in Pubmed per year (1997-2012). the statistics was done using the Medline Trend Service http:/ dan.corlan.net/medline-trend.html. Contributed in different sub-netwo...

5

BioCode's Notes: August 2015

http://computationalproteomic.blogspot.com/2015_08_01_archive.html

Computational Proteomics and Bioinformatics. Saturday, 29 August 2015. DIA-Umpire Pipeline Using BioDocker containers. By   Felipe Leprevost. 160;and  Yasset Perez-Riverol. The complexity of some bioinformatic softwares is well-known and it has been commented in different papers. And blog posts, etc. Especially, those softwares that depend of many software components and tools making impossible for a testing/new-user try for the first time the software.  @BioDocker aim to simplify the process. Imagine th...

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Computational Proteomics and Bioinformatics. Thursday, 13 August 2015. The future of Proteomics: The Consensus. After the Big Nature papers about the Human Proteome [1]. Thursday, August 13, 2015. Monday, 27 July 2015. One big lesson I just learn. But also because they share, they help, they support, and they give their ideas without concern. People, that like to talk about science, they encourage young researchers without fear of others, without fear of being open. Monday, July 27, 2015. And my first tw...

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