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Welcome to Viking’s Documentation — Viking 1.1 documentation

Viking 1.1 documentation. Welcome to Viking’s Documentation. Viking is a multi-user web-based collaborative management system for images and volumes which allows users to view multi-terabyte datasets, annotate images with their own annotation schema, and summarize the results. Viking was developed by James Anderson at the Marc Lab. For use with the first retinal connectome which was assembled using SSTEM and Computation Molecular Phenotyping. To build our volumes. Viking requires the following:.

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Viking 1.1 documentation. Welcome to Viking’s Documentation. Viking is a multi-user web-based collaborative management system for images and volumes which allows users to view multi-terabyte datasets, annotate images with their own annotation schema, and summarize the results. Viking was developed by James Anderson at the Marc Lab. For use with the first retinal connectome which was assembled using SSTEM and Computation Molecular Phenotyping. To build our volumes. Viking requires the following:.
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5 viking client installation
6 windows 7
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8 contents
9 exporting data
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Welcome to Viking’s Documentation — Viking 1.1 documentation | connectomes.utah.edu Reviews

https://connectomes.utah.edu

Viking 1.1 documentation. Welcome to Viking’s Documentation. Viking is a multi-user web-based collaborative management system for images and volumes which allows users to view multi-terabyte datasets, annotate images with their own annotation schema, and summarize the results. Viking was developed by James Anderson at the Marc Lab. For use with the first retinal connectome which was assembled using SSTEM and Computation Molecular Phenotyping. To build our volumes. Viking requires the following:.

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Hello! Welcome to Synology Web Station!

Web Station has been enabled. Volumes will be visible soon. To finish setting up your website, please see the "Web Service" section of DSM Help.

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1

About — Viking 1.1 documentation

http://connectomes.utah.edu/about.html

Viking 1.1 documentation. The majority of Viking was developed at the Marc Lab. Shoeb Mohammed - Visualization website. Drew Ferrell - Pyre and Quality Assurance. Scientific Computing Insitute - Image registration. Enter search terms or a module, class or function name. 2015, James Anderson. Powered by Sphinx 1.3.1. Alabaster 0.7.3.

2

Export — Viking 1.1 documentation

http://connectomes.utah.edu/export/toctree.html

Viking 1.1 documentation. Export from the web page. Export directly from a URL. Enter search terms or a module, class or function name. 2015, James Anderson. Powered by Sphinx 1.3.1. Alabaster 0.7.3.

3

Video Tutorials — Viking 1.1 documentation

http://connectomes.utah.edu/client/movies.html

Viking 1.1 documentation. Tracing efficiently can be a challenge for new users. As an aid to people wanting to use Viking or those understanding where our results come the main RC1 annotators were put in a room and recorded their thoughts during a two hour tracing session. Enter search terms or a module, class or function name. 2015, James Anderson. Powered by Sphinx 1.3.1. Alabaster 0.7.3.

4

Developer Documentation — Viking 1.1 documentation

http://connectomes.utah.edu/server/toctree.html

Viking 1.1 documentation. Web Service Deployment Procedure. Enter search terms or a module, class or function name. 2015, James Anderson. Powered by Sphinx 1.3.1. Alabaster 0.7.3.

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Connectome Viz >>

http://connectomes.utah.edu/viz

Marc Lab, Moran Eye Institute, University Of Utah. Welcome to Marc lab! To use the website or Register. To create a new account. Copy 2011 Marc Lab, University of Utah. Best viewable in Firefox, Safari and Chrome - Optimized for Wide screens Contact Developer. Simple Modal Window Close it.

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Background — Nornir 1.3.1 documentation

http://nornir.github.io/background/background.html

Nornir 1.3.1 documentation. Glossary of terms in context. To build a 3D volume using our transmission electron microscopes we begin by taking a sample and embedding it in a block. Of plastic resin. This block is then cut into thin, about 70-90nm, sections. Each section is placed on a grid or a slide. At 5000X our transmission electron microscope can produce an image representing an 8um square. To collect a larger area we collect a mosaic. A single image of the entire mosaic. Glossary of terms in context.

marclab.org marclab.org

Code | Marclab

http://marclab.org/tools/code

The Retinal Connectome, Neural Remodeling, and Metabolomics. Nornir aligns the MarcLab’s raw data into registered volumes. The code is available via Github:. Https:/ nornir.github.io/. The Viking annotation client and server is documentated at http:/ connectomes.utah.edu. The source code is also available via Github. Robert E. Marc. Bryan W. Jones. Carl B. Watt. James R. Anderson. Retina, Connectomics and Disease. The Viking Annotation System. Dehydration and Resin Embedding. Marclab Journal Cover Gallery.

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Overview of volume building — Nornir 1.3.1 documentation

http://nornir.github.io/overview/overview.html

Nornir 1.3.1 documentation. Overview of volume building. To build a 3D volume using our transmission electron microscopes we begin by taking a sample and embedding it in a block. Of plastic resin. This block is then cut into thin, about 70-90nm, sections. Each section is placed on a grid or a slide. At 5000X our transmission electron microscope can produce an image representing an 8um square. To collect a larger area we collect a mosaic. A single image of the entire mosaic. Tiles are captured at 5000X, e...

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Welcome to Viking’s Documentation — Viking 1.1 documentation

Viking 1.1 documentation. Welcome to Viking’s Documentation. Viking is a multi-user web-based collaborative management system for images and volumes which allows users to view multi-terabyte datasets, annotate images with their own annotation schema, and summarize the results. Viking was developed by James Anderson at the Marc Lab. For use with the first retinal connectome which was assembled using SSTEM and Computation Molecular Phenotyping. To build our volumes. Viking requires the following:.

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