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Continuous Integration | CI for scientific software at RENCI.CI for scientific software at RENCI.
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CI for scientific software at RENCI.
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Continuous Integration | CI for scientific software at RENCI. | continuousintegration.wordpress.com Reviews
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CI for scientific software at RENCI.
continuousintegration.wordpress.com
November | 2010 | Continuous Integration
https://continuousintegration.wordpress.com/2010/11
CI for scientific software at RENCI. Monthly Archives: November 2010. November 30, 2010. Introduction Let’s just start with a picture. Figure 1. CI Server environment architecture. The CI Server The three systems – Hudson, Nexus and Opengrok are installed in a single Tomcat instance. The Tomcat instance, bundled with all three applications is … Continue reading →. November 30, 2010. November 22, 2010. Enter your email address to subscribe to this blog and receive notifications of new posts by email.
stevencox | Continuous Integration
https://continuousintegration.wordpress.com/author/stevencox
CI for scientific software at RENCI. November 30, 2010. Introduction Let’s just start with a picture. Figure 1. CI Server environment architecture. The CI Server The three systems – Hudson, Nexus and Opengrok are installed in a single Tomcat instance. The Tomcat instance, bundled with all three applications is … Continue reading →. November 30, 2010. November 22, 2010. Enter your email address to subscribe to this blog and receive notifications of new posts by email. Join 3 other followers.
Architecture and Configuration | Continuous Integration
https://continuousintegration.wordpress.com/2010/11/30/architecture
CI for scientific software at RENCI. November 30, 2010. Let’s just start with a picture. CI Server environment architecture. At a high level, installing involves downloading and unpacking the archive, sourcing the environment script and configuring the applications. Tar xvzf ci-server-0.1-SNAPSHOT.tar.gz. Install build tools. At RENCI, these include:. Java JDK 1.6.0 21. Apache Maven 2.2.1. Fortran 11.1 – and any other compilers needed. Source the environment file. Configure an SSL certificate for mod ssl.
Continuous Integration | Continuous Integration
https://continuousintegration.wordpress.com/2010/11/22/5
CI for scientific software at RENCI. Designing the Stack →. November 22, 2010. Is the build automation tool used to periodically build a wide assortment of software components. It’s a mature, stable application with a large user base and extensive feature set. Automated builds notify teams of failures quickly to help keep systems healthy. This entry was posted in Uncategorized. Designing the Stack →. Leave a Reply Cancel reply. Enter your comment here. Address never made public). Enter your email address...
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stevencox | An Open Science Grid Work Log
https://osglog.wordpress.com/author/stevencox
An Open Science Grid Work Log. Things seen on the OSG trail. Duke Physics MPI at RENCI Blueridge with Grayson and Pegasus 4.0. June 6, 2012. Overivew Duke Physics will be running MPI jobs on RENCI Blueridge. The model is new and expected to grow. It’s been built with cluster specific libraries so it’ll be executed at Blueridge for the foreseeable future. At the same time, … Continue reading →. February 17, 2012. High Throughput Computing (HTC). High Throughput Parallel Computing (HTPC). February 13, 2012.
A Tier-3 Open Science Grid Compute Element | An Open Science Grid Work Log
https://osglog.wordpress.com/2010/08/16/planning-an-open-science-grid-osg-compute-element-ce
An Open Science Grid Work Log. Things seen on the OSG trail. Grid Authorization with MyProxy. Parallel Amber9 →. A Tier-3 Open Science Grid Compute Element. August 16, 2010. I RENCI Blueridge as Compute Element. RENCI’s new Open Science Grid (OSG) Compute Element (CE). Will accept job submissions to be executed on the Blueridge cluster. A CE presents a uniform interface other OSG sites can use to submit jobs. Major functional components of a CE include:. Compute elements must make provision for storage o...
An OSG Map | An Open Science Grid Work Log
https://osglog.wordpress.com/2010/09/28/an-osg-map
An Open Science Grid Work Log. Things seen on the OSG trail. IRODS in the Duke, NERSC, RENCI Collaboration. PMEMD on Blueridge →. September 28, 2010. The Open Science Grid is a large global collaboration. Thousands of computing resources are shared through its protocols and conventions. While this is good news, it’s not always a simple matter to understand how the resources are connected and what’s available. These and other needs suggested it would be useful to have a visual map of the OSG. Which seek t...
SAGA Hadoop | An Open Science Grid Work Log
https://osglog.wordpress.com/2012/02/17/saga-hadoop
An Open Science Grid Work Log. Things seen on the OSG trail. NAMD with PBS and Infiniband on NERSC Dirac. Duke Physics MPI at RENCI Blueridge with Grayson and Pegasus 4.0 →. February 17, 2012. Has become a fixture where big data is concerned but it has been difficult to use in HPC and HTC cluster environments. This is becoming unfortunate as an increasing number of new algorithms assume Hadoop’s an option. I tried SAGA-Hadoop first but it should be noted that, myHadoop. To make this plausible for the OSG:.
Grid Jobs with OSG Matchmaker | An Open Science Grid Work Log
https://osglog.wordpress.com/2010/09/07/grid-jobs-with-osg-matchmaker
An Open Science Grid Work Log. Things seen on the OSG trail. IRODS in the Duke, NERSC, RENCI Collaboration →. Grid Jobs with OSG Matchmaker. September 7, 2010. Thanks to Mats for the very helpful advanced grid job example. Provided in the OSG Matchmaker. It Isn’t Easy Being a Grid Job. A central challenge of running complex grid applications is managing the schedule, failures and diverse outcomes affecting individual compute jobs. Specify the order of execution of parts of the job. Define policies for co...
High Throughput Parallel Molecular Dynamics on OSG | An Open Science Grid Work Log
https://osglog.wordpress.com/2010/11/04/high-throughput-parallel-molecular-dynamics
An Open Science Grid Work Log. Things seen on the OSG trail. Engage Submit Host Architecture →. High Throughput Parallel Molecular Dynamics on OSG. November 4, 2010. RENCI’s working with researchers interested in running high throughput parallel molecular dynamics simulations on OSG. The program we’d like to execute is called PMEMD (Particle Mesh Ewald Molecular Dynamics). PMEMD is a high-performance, parallel component of the larger Amber9. Launch an MPI job using. The use of the RENCI CyberInfrastructu...
An Open Science Grid Work Log | Things seen on the OSG trail. | Page 2
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An Open Science Grid Work Log. Things seen on the OSG trail. Newer posts →. Protected: Grayson – Science Workflow on the Hybrid Grid. August 10, 2011. This content is password protected. To view it please enter your password below:. High Throughput Computing (HTC). High Throughput Parallel Computing (HTPC). Whole Genome Sequencing and Pegasus. June 7, 2011. As a first step, they joined the OSG Engage. VO This provides them access to the new Engage Submit node. Getting used to searching the Pegasus logs f...
Virtualizing Engage Central | An Open Science Grid Work Log
https://osglog.wordpress.com/2010/10/25/osg-cyberinfrastructure-vm-migration
An Open Science Grid Work Log. Things seen on the OSG trail. High Throughput Parallel Molecular Dynamics on OSG →. October 25, 2010. Well, this is just not going to be an interesting post to most of you. That’s just the way it is sometimes. We need to move engage-central off of the old physical hardware it’s on to a new virtual machine. The old machine will remain online until we’re comfortable everything on the new one is working properly. Create the virtual machine. Operating System: CentOS 5.5. Chown ...
PMEMD on Blueridge | An Open Science Grid Work Log
https://osglog.wordpress.com/2010/10/06/pmemd-on-blueridge
An Open Science Grid Work Log. Things seen on the OSG trail. The OSG Compute Element A Trip Report →. October 6, 2010. This is pmemd compiled against native MPI libraries executing on the RENCI Blueridge cluster. The job submission workflow uses the RENCI-CI script library. The job run script uses Globus tools to transfer the pmemd application and input files to Blueridge. There, it uses PBS tools directly to submit the job. Job submission is done directly to the new Blueridge CE. Enter your comment here.
iRODS in the Duke, NERSC, RENCI Collaboration | An Open Science Grid Work Log
https://osglog.wordpress.com/2010/09/08/gsi-authentication-in-irods
An Open Science Grid Work Log. Things seen on the OSG trail. Grid Jobs with OSG Matchmaker. An OSG Map →. IRODS in the Duke, NERSC, RENCI Collaboration. September 8, 2010. Research Data and Computation Scenario. Here are some basic characteristics of the problem space we’re addressing in our collaboration with Duke Physics and NERSC:. The Duke research team will run OSG grid jobs manipulating terabytes of data. The team will use iRODS as the logical data grid infrastructure. There are several available c...
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Continuous Integration & Delivery
Continuous Integration and Delivery. Czy twój ostatni release był bolesny? Ciągła integracja – cechy dobrego wdrożenia. Continuous Intergration to ciągła integracja, jako grupa praktyk XP, zdobyła uznanie na całym świecie, skutecznie eliminując liczbę błędów. W wytwarzanym oprogramowaniu. Efektywne wdrożenie tych praktyk to m.in.:. 8211; błędy integracyjne wykrywane są jeszcze na etapie programowania,. Stały dostęp do najnowszej wersji. Na łączenie kodu tworzonego przez wielu programistów,. Książka trene...
continuousintegration.wordpress.com
Continuous Integration | CI for scientific software at RENCI.
CI for scientific software at RENCI. Is the build automation tool used to periodically build a wide assortment of software components. It’s a mature, stable application with a large user base and extensive feature set. Automated builds notify teams of failures quickly to help keep systems healthy. November 22, 2010. November 30, 2010. Let’s just start with a picture. CI Server environment architecture. The three systems – Hudson, Nexus and Opengrok are installed in a single Tomcat instance. The...Ensure ...
continuousintegrationblog.wordpress.com
continuousintegrationblog
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Continuous Integration Tools - Build, Unit Tests, Continuous Deployment, DevOps
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Continuous Integration Tools - Automated Software Configuration Management, Build and Unit Tests
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