costalab.org

Institute for Computational Genomics – Computational Genomics

Darr; Skip to Main Content. On computational methods to for analysis of epigenetic and regulatory mechanisms of dynamical processes as cell differentiation, aging and the onset of diseases. More on research . New name – Institute for Computational Genomics. Project funded by DFG – Bioinformatics of Open Chromatin. Tutorial on Inference of Regulatory Networks at ISMB/ECCB 2017. Collaborative work published in Nature Communications, Genome Research and Gut. Top Reading Papers 2016 at Recomb-RG.

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Institute for Computational Genomics – Computational Genomics | costalab.org Reviews

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Darr; Skip to Main Content. On computational methods to for analysis of epigenetic and regulatory mechanisms of dynamical processes as cell differentiation, aging and the onset of diseases. More on research . New name – Institute for Computational Genomics. Project funded by DFG – Bioinformatics of Open Chromatin. Tutorial on Inference of Regulatory Networks at ISMB/ECCB 2017. Collaborative work published in Nature Communications, Genome Research and Gut. Top Reading Papers 2016 at Recomb-RG.

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Institute for Computational Genomics – Computational Genomics | costalab.org Reviews

https://costalab.org

Darr; Skip to Main Content. On computational methods to for analysis of epigenetic and regulatory mechanisms of dynamical processes as cell differentiation, aging and the onset of diseases. More on research . New name – Institute for Computational Genomics. Project funded by DFG – Bioinformatics of Open Chromatin. Tutorial on Inference of Regulatory Networks at ISMB/ECCB 2017. Collaborative work published in Nature Communications, Genome Research and Gut. Top Reading Papers 2016 at Recomb-RG.

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costalab.org

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Release of Differential Peak Calling Tool ODIN | IZKF Computational Biology and Bioinformatics Research Group

http://costalab.org/differential-peak-calling-tool-odin

Darr; Skip to Main Content. Release of Differential Peak Calling Tool ODIN. November 4, 2014. We have released the first version of the differential peak caller ODIN. Please check ODIN’s website. And it’s publication. 8249; Method for Detection of DNAse footprints. PhD Position in Bioinformatics of lncRNAs and Epigenomics (closed). Publication on differential peak caller THOR in NAR. Congratulations to Manuel Allhoff for his Ph.D. defense! Paper accepted in Aging. Andre Camara defended his PhD.

2

Teaching | IZKF Computational Biology and Bioinformatics Research Group

http://costalab.org/teaching

Darr; Skip to Main Content. SOSE 2016 – Practical Course in Bioinformatics. SOSE 2015 – Practical Course in Bioinformatics. SOSE 2013 – Practical Course in Computational Biomedicine. Previous lectures of the group (in portuguese). 2016 IZKF Computational Biology and Bioinformatics Research Group.

3

Funding | IZKF Computational Biology and Bioinformatics Research Group

http://costalab.org/funding

Darr; Skip to Main Content. Start Program – Medicine Faculty RWTH Aachen. 2016 IZKF Computational Biology and Bioinformatics Research Group.

4

Team | IZKF Computational Biology and Bioinformatics Research Group

http://costalab.org/team-2

Darr; Skip to Main Content. Eduardo Gade Gusmao – Research Associate. Interests: Gene regulation Transcription Factor Binding Sites, Chromatin Structure, Hidden Markov ModelEmail:. Manuel Allhoff – Ph.D. Candidate / AICES Fellow. Interests: Next Generation Sequencing, Histone Modification, Hidden Markov ModelEmail:. Pablo Andretta Jaskowiak – Ph.D. Candidate (joint supervision with Ricardo Campello, ICMC, USP). Interests: Gene Expression, Cluster Analysis, Cluster ValidationEmail:.

5

Publications | IZKF Computational Biology and Bioinformatics Research Group

http://costalab.org/publications-2

Darr; Skip to Main Content. Sere K., Freitas, J. Zenke, M., Costa, I.G. 2016), Differential Peak Calling of ChIP-seq Signals with Replicates with THOR, Nucleic Acids Research. Epub gkw680 [ paper. Zenke, M., Costa, I.G. 2016), Analysis of computational footprinting methods for DNase sequencing experiments, Nature Methods. 13, 303 309 [ paper. Nascimento, A. C. Prudencio, R.B.C, Costa I.G. A Multiple Kernel Learning algorithm for drug-target interaction prediction, BMC. 51(2):267-270. [ paper. Deary I&#46...

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Darr; Skip to Main Content. On computational methods to for analysis of epigenetic and regulatory mechanisms of dynamical processes as cell differentiation, aging and the onset of diseases. More on research . New name – Institute for Computational Genomics. Project funded by DFG – Bioinformatics of Open Chromatin. Tutorial on Inference of Regulatory Networks at ISMB/ECCB 2017. Collaborative work published in Nature Communications, Genome Research and Gut. Top Reading Papers 2016 at Recomb-RG.

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