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Composition Profiler

Composition Profiler is a web-based tool that automates detection of enrichment or depletion patterns of individual amino acids or groups of amino acids classified by several physico-chemical and structural properties. Such as aromaticity, charge, polarity, hydrophobicity, flexibility, surface exposure, solvation potential, interface propensity, normalized frequency of occurrence in α helices, β structures, and coils, linker and disorder propensities, size and bulkiness. And A Keith Dunker.

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Composition Profiler | cprofiler.org Reviews

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Composition Profiler is a web-based tool that automates detection of enrichment or depletion patterns of individual amino acids or groups of amino acids classified by several physico-chemical and structural properties. Such as aromaticity, charge, polarity, hydrophobicity, flexibility, surface exposure, solvation potential, interface propensity, normalized frequency of occurrence in α helices, β structures, and coils, linker and disorder propensities, size and bulkiness. And A Keith Dunker.

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Composition Profiler | cprofiler.org Reviews

https://cprofiler.org

Composition Profiler is a web-based tool that automates detection of enrichment or depletion patterns of individual amino acids or groups of amino acids classified by several physico-chemical and structural properties. Such as aromaticity, charge, polarity, hydrophobicity, flexibility, surface exposure, solvation potential, interface propensity, normalized frequency of occurrence in α helices, β structures, and coils, linker and disorder propensities, size and bulkiness. And A Keith Dunker.

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cprofiler.org

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Composition Profiler - Help

http://www.cprofiler.org/help.html

Query and background samples. Composition Profiler provides an easy way to visually investigate bias in amino acid composition between two sets of protein sequences. A set of proteins under study (the query sample. Can be analyzed against a representative sample of proteins from the organism under study, or a group of proteins with a contrasting functional annotation (the background sample. Which provides a suitable background amino acid distribution. Sequences should be entered in FastA. DisProt 3.4...

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Composition Profiler - Run

http://www.cprofiler.org/cgi-bin/profiler.cgi

Upload query sample file:. Upload background sample file:. Significance (α) value:. Alpha helix frequency (Nagano). Beta structure frequency (Nagano). Alpha helix frequency (N). Beta structure frequency (N).

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Composition Profiler - Examples

http://www.cprofiler.org/examples.html

Homodimer and heterodimer interfaces. 1988; Jones and Thornton, 1996; Waldar and Thornton 2001). Heterocomplex interfaces are enriched in all three major aromatics (trypthopan, tyrosine, and phenylalanine), as these three residues are bulky, planar and rigid which enhances the prospects for binding. 1ACB E FHFCHCGIWLYATWKSCMGSVSWGSSG 1BGS A KQWASIFSREKEFRNSRDHYQF 1CSE E NHLSGSGYISLGGASAGNSFYLNGTSM 1FSS A QYVDEQFPGENPNMQIDWNLFDSIFRYGKDL 1GLA G QNRHGTRRPGIETTERNY 1SMP A YGTQAYAQNEDYTHEHHNAGNPTYNRYWSTNDGGHY...

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Algorithms and Computational Biology Lab

http://theory.cs.ucr.edu/index.html

We are interested in all aspects of the design and analysis of combinatorial algorithms. Ongoing research includes:. Average-case analysis of algorithms,. We are especially interested in algorithmic problems arising in computational molecular biology, such as:. SNP's and haplotype inference,. Genome-wide analysis of structures of gene families,. DNA microarray analysis,. Oligonucleotide fingerprinting of ribosomal RNA genes (OFRG). Is a high-throughput system for ortholog assignment on a genome scale.

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cprofiler.org

Composition Profiler

Composition Profiler is a web-based tool that automates detection of enrichment or depletion patterns of individual amino acids or groups of amino acids classified by several physico-chemical and structural properties. Such as aromaticity, charge, polarity, hydrophobicity, flexibility, surface exposure, solvation potential, interface propensity, normalized frequency of occurrence in α helices, β structures, and coils, linker and disorder propensities, size and bulkiness. And A Keith Dunker.

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