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Cryptogenomicon – Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas labGenome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab
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Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab
http://www.cryptogenomicon.org/
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Howard Hughes Medical Institute
Sean Eddy
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Howard Hughes Medical Institute
Sean Eddy
HHMI J●●●●●●a Farm
As●●rn , VA, 20147
US
View this contact
Howard Hughes Medical Institute
Sean Eddy
HHMI J●●●●●●a Farm
As●●rn , VA, 20147
US
View this contact
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Cryptogenomicon – Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab | cryptogenomicon.org Reviews
https://cryptogenomicon.org
Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab
cryptogenomicon.org
now-it-can-be-told | Cryptogenomicon
https://cryptogenomicon.org/tag/now-it-can-be-told
Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. September 19, 2014. In July 2015, our laboratory will move to Harvard University. I’ve accepted an offer to join Harvard’s faculty in two departments: Molecular and Cellular Biology. In the Faculty of Arts and Sciences), and Applied Mathematics. Continue reading →. Posted in New from the lab. Blog at WordPress.com. Blog at WordPress.com. Follow “Cryptogenomicon”. Get every new post delivered to your Inbox.
Cryptogenomicon | Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab | Page 2
https://cryptogenomicon.org/page/2
Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. Newer posts →. HMMER mission control: we are go for launch vehicle separation(s). June 2, 2015. Were officially launched today. At the EMBL European Bioinformatics Institute (EBI). In Cambridge UK. You can read an EBI press release here. This marks the completion of the pilot HMMER server project at Janelia Farm and its transition to the EBI. All of this has been led by Rob Finn,. Because of the terrifyingly sophisticated ...
Reboot | Cryptogenomicon
https://cryptogenomicon.org/2014/09/19/reboot
Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. September 19, 2014. In July 2015, our laboratory will move to Harvard University. I’ve accepted an offer to join Harvard’s faculty in two departments: Molecular and Cellular Biology. In the Faculty of Arts and Sciences), and Applied Mathematics. We will have been at Janelia Farm. At Harvard, with support from the Howard Hughes Medical Institute. We’re going to continue our new work in neuroscience too (well, genomics...
seaneddy | Cryptogenomicon
https://cryptogenomicon.org/author/cryptogenomicon
Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. Open position: lab coordinator. August 4, 2016. We have an open position for a new lab coordinator. Ads are running at Nature. And elsewhere. Our LC is our point of contact for everything administrative that makes the lab run smoothly, including responsibility for our financial accounting/purchasing with both HHMI’s. For info on how to apply (to HHMI HR, who do the preliminary resume screening for us). February 21, 2016.
Cryptic genetic variation in software: hunting a buffered 41 year old bug | Cryptogenomicon
https://cryptogenomicon.org/2014/10/13/cryptic-genetic-variation-in-software-hunting-a-buffered-41-year-old-bug
Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. Cryptic genetic variation in software: hunting a buffered 41 year old bug. October 13, 2014. Means that a genome can contain mutations whose phenotypic effects are invisible because they are suppressed or buffered, but under rare conditions they become visible and subject to selection pressure. Still used in lots of numerical codebases, including GNU Octave. Had crashed. As with most bug reports on our code, my initial...
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The Grand Locus
http://blog.thegrandlocus.com/tag/gumbel
Life for statistical sciences. June babies and bioinformatics. Filed under extreme value fallacy. 8226; 06 April 2014 •. In July 1982, paleontologist Steven Jay Gould. Was diagnosed with cancer. Facing a median prognosis of only 8 months survival, he used his knowledge of statistics to prepare for the future. As he explains in The Median Isn’t the Message. If half of the patients died of this rare case of mesothelioma. If not the median. Then what is the message? June babies and anorexia.
Once upon a BLAST | The Grand Locus
http://blog.thegrandlocus.com/2014/06/once-upon-a-blast
Life for statistical sciences. Once upon a BLAST. Filed under series: focus on. 8226; 30 June 2014 •. Point well taken. But this unspoken academic pact has sealed what I call the. In simple words, the curse is that by putting all the emphasis on the results, researchers become blind to the research. Because they never discuss it. How to carry out good research? How to discover things? These are the questions that nobody raises (well, almost. Where did I leave off? Is the director of the NCBI. Dynamic] al...
traviswheelerlab.wordpress.com
Student receives fellowship for summer 2016 | Wheeler Lab
https://traviswheelerlab.wordpress.com/2015/06/09/student-receives-fellowship-for-summer-2016
Computational Biology in Paradise (aka Missoula). Student receives fellowship for summer 2016. June 9, 2015. Alex Nord has just been awarded a Center for Biomolecular Structure and Dynamics Graduate Student Fellowship for the summer of 2016. The fellowship will support Alex while he continues research on using spaced seeds to boost both speed and sensitivity in the context of database search with profile hidden Markov models (in HMMER. Read more at: http:/ news.umt.edu/2015/06/060915cbsd.php.
traviswheelerlab.wordpress.com
Say hello to Dfam1.4 | Wheeler Lab
https://traviswheelerlab.wordpress.com/2015/05/13/say-hello-to-dfam1-4
Computational Biology in Paradise (aka Missoula). Say hello to Dfam1.4. May 13, 2015. With Dfam, we are striving to build models of repeat families that yield high sensitivity without undue false annotation. In this release of Dfam, we have improved our model building strategy to reduce the potential for false annotation, especially in the context of overextending alignments around true interspersed repeat instances. Go to the Xfam blog to read the rest … ( Say hello to Dfam1.4. Leave a Reply Cancel reply.
Longest runs and DNA alignments | The Grand Locus
http://blog.thegrandlocus.com/2014/12/longest-runs-and-dna-alignments
Life for statistical sciences. Longest runs and DNA alignments. Filed under sequence alignment. 8226; 31 December 2014 •. It also holds for PacBio and Oxford Nanopore by the way). The problem of sequence alignment. Gets a lot of attention from bioinformaticians (the list of alignment software. Counts more than 200 entries). Yet, the statistical aspect of the problem is often neglected. In the post Once upon a BLAST. David Lipman explained that the breakthrough of BLAST. Longest runs of 1s. P(X 0 leq x) a...
Community | Freelancing science
https://freelancingscience.com/category/community
Visualization, protein science, open science and freelancing science. Proposal for Science 2.0 lectures. I’ve just submitted a proposal for three lectures about different aspect of Science 2.0. Target audience are PhD-students. Below you can find a brief overview. Probably the details will change a bit when I start to prepare the lectures (for example I’m aware that Etherpad is on its way out), but nevertheless you are very welcome to comment and suggest different approach. Spectrum of openness in scienc...
The Grand Locus
http://blog.thegrandlocus.com/tag/benchmark
Life for statistical sciences. Filed under software pollution. 8226; 20 May 2015 •. I never planned to do bioinformatics. It just happened because I liked the time in front of my computer. Still, as every sane individual, I sometimes think that I could do something else with my life, and I wonder whether I am doing the right thing. On this topic, I recently came across the famous farewell to bioinformatics. By Frederick J. Ross. There are indeed many issues in the bioinformatics community and I.
The Grand Locus
http://blog.thegrandlocus.com/tag/statistics
Life for statistical sciences. Did Mendel fake his results? 8226; 11 April 2016 •. You went to high school and you learned genetics. You heard about a certain Gregor Mendel. But then you came to the conclusion that he just got lucky and that he was right for the wrong reasons. After all, he was just a monk on gardening duties, why would you expect him to understand anything about real science? Read more ». Bayesian networks and causation. 8226; 20 June 2015 •. However, for Judea Pearl. The key idea is th...
traviswheelerlab.wordpress.com
A powerful HMMER for data mining | Wheeler Lab
https://traviswheelerlab.wordpress.com/2015/06/02/hmmer-web-server-update
Computational Biology in Paradise (aka Missoula). A powerful HMMER for data mining. June 2, 2015. New paper describing recent advances in the HMMER web server (primarily driven by the endlessly talented Rob Finn and Jody Clements):. Finn RD, Clements J, Arndt W, et al. (2015) HMMER web server: 2015 update. Also, a little love from the EMBL-EBI press machine: A powerful HMMER for data mining. This entry was posted in HMMER. Say hello to Dfam1.4. RNAcentral now uses nhmmer for searches →.
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cryptogenic in a sentence | simple examples
In A Sentence .org. The best little site that helps you understand word usage with examples. Cryptogenic in a sentence. The 35-year-old womans symptoms were typical of this unusual kind of cryptogenic stroke, says Jose Biller, MD, professor and chair of the neurology department at Loyola University,. After the influenza, some cryptogenic temperature set in. In 2007, Rajaratnam suffered a severe cryptogenic stroke, or a stroke of undetermined cause, Wise said. Use admonishments in a sentence. If it was a ...
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Cryptogenomicon – Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab
Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. December 16, 2017. December 16, 2017. The Harvard FAS Informatics group, led by Tim Sackton, has an open bioinformatics scientist position, to work with Catherine Dulac's lab on large-scale single-cell RNA-seq in mouse brain. For more information on the position and how to apply, see the ad on the Harvard jobs site. Thread count in HMMER3. August 7, 2017. Snoscan and squid in the 21st century. April 26, 2017. April 27, 2017.
Crypto-Gentile
Sunday, 5 October 2008. Queen's University Law Lecturer, Revolutionary Communist and IRA helpmate. A blitz of spectacular attacks in and around Belfast's Queen's University convinced the police a terrorist mole had penetrated the campus. No one suspected that the quiet, bespectacled law lecturer and Englishman David Ewins might be behind the murder and mayhem. His hero was the notorious English traitor and Soviet spy Kim Philby. His armed police bodyguards scanned the tree-lined street for danger. Al...
~Crypto Ghost~
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Crpytogic. Best practices for passwords
Good password habits. Write-up by Sascha Mundstein. Concept by Murli Bhamidipati. Here is a simple trick to maintain a multitude of different passwords with very little effort. You just need to remember three steps. Choose a fixed password component. Choose a variable password component. Find a consistent source of variability. For example you could use the name of the website or service you are logging in to. It is important to use some not so obvious scheme to extract the variable part. Cl0udCompu inG ...
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