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Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays | Why?
https://csgillespie.wordpress.com/2012/07/13/analysing-time-course-microarray-data-using-bioconductor-a-case-study-using-yeast2-affymetrix-arrays
July 13, 2012. Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays. 8212; Tags: latex. 8212; csgillespie @ 2:32 pm. A few years ago I was involved in analysing some time-course microarray data. Our biological collaborators were interested in how we analysed their data, so this lead to a creation of tutorial, which in turn lead to a paper. In this latest update to the paper I’ve. Moved the paper to github. Changed from Sweave to knitr. UseR 2015: Romain Fr...
useR 2015: Networks | Why?
https://csgillespie.wordpress.com/2015/07/01/user-2015-networks
July 1, 2015. 8212; csgillespie @ 9:39 am. These are my initial notes from useR 2015. Will revise when I have time. FbRads: Analyzing and managing Facebook ads from R (Gergely Daroczi). Google/Amazon/Facebook use our information. Ad platforms: Google: RAdwords, facebook likes: fbRads. You can use the facebook API to get information from facebook. Get hashes of email address, not the actual address. In the last few years, the API has changed. Create a facebook app with API to get a token. Need to learn re...
UK R Courses – 2012 | Why?
https://csgillespie.wordpress.com/2011/09/17/uk-r-courses-2012
September 17, 2011. UK R Courses – 2012. 8212; Tags: R. 8212; csgillespie @ 1:01 pm. The School of Mathematics and Statistics. At Newcastle University (UK), are again running some R courses. In January, 2012, we will run:. January 16th: Introduction to R. January 17th: Programming with R. January 18th and 19th: Advanced graphics with R. If you have any questions, feel free to contact me: colin.gillespie@newcastle.ac.uk. Bespoke courses are also on request. Leave a Comment ». Feed for comments on this post.
useR 2015: Romain Francois: My R adventures | Why?
https://csgillespie.wordpress.com/2015/07/01/user-2015-romain-francois-my-r-adventures
July 1, 2015. UseR 2015: Romain Francois: My R adventures. 8212; Tags: R. 8212; csgillespie @ 8:05 am. Using R since 2002 and has been working on Rcpp, Rcpp11, Rcpp14 and dplyr. Internals. Worked on a number of big projects. 2005 he set up the R Graph Gallery. 2009 worked on rJava. Key themes are Performance and usabililty. Creating objects was messy. D -jnew("java/lang/Double", 42 .jcal(d, "D", "doubleValue). D - new(J("java/lang/Double"), 42) d$doubleview. Also much easier to import java packages.
Reviewing a paper that uses GPUs | Why?
https://csgillespie.wordpress.com/2011/07/12/how-to-review-a-gpu-statistics-paper
July 12, 2011. Reviewing a paper that uses GPUs. 8212; Tags: computer. 8212; csgillespie @ 1:53 pm. GPUs) are all the rage. Would be incomplete if at least one article didn’t mention the word “GPUs”. Like any good geek, I was initially interested. For speed comparisons, do the authors compare a GPU with a multi-core. CPU In many papers, the comparison is with a single-core CPU. If a programmer can use CUDA. They can certainly code in pthreads. Take off a factor of eight when comparing to a multi-core CPU.
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bioinformatics.knowledgeblog.org
Volcano plots of microarray data | The Bioinformatics Knowledgeblog
http://bioinformatics.knowledgeblog.org/2011/06/21/volcano-plots-of-microarray-data
A bioinformatics tutorial resource. On June 21, 2011 by Colin Gillespie in Transcriptomics. Volcano plots of microarray data. To run the R commands in this post, you should first work through Analysing microarry data in BioConductor. Is a scatter plot that is often used when analysing micro-array data sets to give an overview of interesting genes. The log fold change is plotted on the x-axis and the negative log10 p-value is plotted on the y-axis. We can use R to determine how many genes are above certai...
Using Emacs to work with R « Stack Exchange Stats Blog
http://stats.blogoverflow.com/2011/08/using-emacs-to-work-with-r
Explore other Stack Exchange communities. Using Emacs to work with R. Well, install Emacs. If it is not already present on your system, and you’re almost done. Emacs is a powerful tool (it’s difficult to say it is just an editor) for programmers and users dealing with text file. It offers a lot of functionalities and will be suitable for the basic copy/paste activity described above. But, wait. There is more to see with the ESS. To the following question. To start ESS simply start Emacs and press. Every ...
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Contact Dr. Giles. Please use the form on the right to send a secure email. I will get back to you as soon as I can. Wheaton, Illinois 60189. The ICAN Hospital Clinic. Rev C Scot Giles, D.Min., LLC. Rev C Scot Giles, D.Min., LLC. The ICAN Hospital Clinic. Specializing in Issues of Health and Well-Being. Get Your Free Report Using the Form on the Bottom of this Page. Click on the Triple Bar in the Upper Left Corner to see the Main Menu. Of the National Guild of Hypnotists. Let me show you the way. If you ...
Why? | A statistical computing blog
November 15, 2017. Speeding up package installation. 8212; Tags: R. 8212; csgillespie @ 11:17 am. Can’t be bothered reading, tell me now. A simple one-line tweak can significantly speed up package installation and updates. See my post at the Jumping Rivers blog. No point duplicating content in two places). June 8, 2017. 8212; Tags: R. 8212; csgillespie @ 8:30 am. Over the next few months we’re running. A number of R, Stan and Scala courses around the UK. Mon Jun 26 – Introduction to R. June 7, 2017.
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