bioinf.comav.upv.es
Getting here — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/getting_here.html
Our complete address is:. Bioinformatics and Genomics group COMAV institute Stair I, second floor CPI Building (Ciutat Politecnica de la Innovacio) Campus de Vera Camino de Vera s/n 46022 Valencia Spain. You can find information about how to get here at the UPV. Web site and at google maps. Is licensed under a Creative Commons Reconocimiento 4.0 Internacional License.
bioinf.comav.upv.es
seq_crumbs — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/seq_crumbs/index.html
Seq crumbs aims to be a collection of small sequence processing utilities. Seq crumbs is modeled after the Unix command line text processing utilities so every utility tries to perform a specific task and most of them take a sequence file as input and create a new processed sequence file as output. This design encourages the assembly of the seq crumbs utilities with Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx. Most seq crumbs can spl...
bioinf.comav.upv.es
Introducción a la bioinformática — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/courses/intro_bioinf/index.html
Bases de datos biológicas. Práctica bases de datos. Búsqueda de secuencias en bases de datos. Métodos predictivos en ADN y ARN. Introducción al análisis de filogenias. Práctica análisis de filogenias. Práctica anotación con Blast2GO. Prácticas bases de datos genómicas. Práctica ensamblaje de secuencias. Introducción a la bioinformática. Búsqueda en bases de datos (ej. Entrez),. Secuenciación de Sanger,. Formatos de ficheros de secuencia,. Proyectos de secuenciación con Staden,. Bases de datos biológicas.
bioinf.comav.upv.es
People — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/people.html
Five people compose the bioinformatic and genomic group at COMAV:. After doing a PhD on molecular genetics moved to the COMAV institute and has worked on plant genetic variation on several horticultural species and on bioinformatics. As a bioinformatician has experience on the sequence analysis, especially on transcriptomes. Contact: jblanca @. Contact: jcanizares @. Contact: jmonteropau @. Contact: pziarsolo @. Contact: vicgarb4 @.
bioinf.comav.upv.es
sff_extract — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/sff_extract/index.html
Warning: We consider this version of sff extract obsolete. The new sff extract is included now in our tool set seq crumbs. 454 sequence reads are usually stored in sff files. In these files the information about the reads is stored: sequece, quality and quality and adapter clips. sff extract extracts the reads from the sff files and stores them into fasta and xml or caf text files. Is licensed under a Creative Commons Reconocimiento 4.0 Internacional License.
bioinf.comav.upv.es
Courses — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/courses.html
Linux y Python para las ciencias de la vida. Linux para las ciencias de la vida. 1 ed Linux para las ciencias de la vida:. Del 03/10/2016 al 05/10/2016. Mail us if your are interested in these courses and we will inform once the registration is about to open. If you are interested in organize these courses in your organization, please contact us. Is licensed under a Creative Commons Reconocimiento 4.0 Internacional License.
bioinf.comav.upv.es
NGS sequence analysis — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/courses/sequence_analysis/index.html
NGS sequence file formats. SNP calling and filtering. Dealing with big result files. Maize SNP calling practice. The course deals with the analysis from NGS reads from the 454, Solid and Illumina sequencers. The main topics are:. Read quality control,. Despite that a small introduction to unix console usage is included in this course, could be interesting to the students to practice with the basic orders before to assist to the course. There are several interesting courses on line, such as:. The Michigan...
bioinf.comav.upv.es
sff_extract — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/sff_extract
Warning: We consider this version of sff extract obsolete. The new sff extract is included now in our tool set seq crumbs. 454 sequence reads are usually stored in sff files. In these files the information about the reads is stored: sequece, quality and quality and adapter clips. sff extract extracts the reads from the sff files and stores them into fasta and xml or caf text files. Is licensed under a Creative Commons Reconocimiento 4.0 Internacional License.
bioinf.comav.upv.es
Bioinformatics & genomics — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/index.html
The COMAV institute is devoted to the preservation of the horticultural plant variability and to the plant breeding on horticultural species. To accomplish these goals we have developed some software that it might be of some use to other researchers like ngs backbone or sff extract. We also provide analysis and technical support to other molecular genetic researchers. Our main research interests are:. Genomic and transcriptomic analysis. Development of genetic markers. Analysis of NGS sequences.
bioinf.comav.upv.es
Informática para las ciencias de la vida: Unix y Python — Bioinformatics at COMAV 0.1 documentation
https://bioinf.comav.upv.es/courses/linux/index.html
La Shell the UNIX. El sistema de ficheros. Procesamiento de ficheros de texto. Informática para las ciencias de la vida: Unix y Python. Sobre la elección de las herramientas. Navegando por el sistema de ficheros. La Shell the UNIX. El sistema de ficheros. Nombres de directorios y archivos. El directorio de trabajo. Rutas relativas y absolutas. Moviendo, renombrando y copiando ficheros. Obteniendo información sobre el sistema de archivos. Completado automático e historia. Donde están los ejecutables?
