cyanolyase.genouest.org
CyanoLyaseGenOuest blast submission form
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CyanoLyase | cyanolyase.genouest.org Reviews
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cyanolyase.genouest.org
Phyletic profiles
http://cyanolyase.genouest.org/phyletic_profile
This table shows the distribution of phycobilin lyases or related proteins in the different genomes of the CyanoLyase database. Co-occurrence of sequences in sets of genomes sharing similar characteristics can easily be spotted and this tool is therefore useful to predict potential heterodimers. An example of this is the previously undescribed CpcSII/CpcUII pair, which reminds the CpcSI/CpcUI heterodimer, recently characterized in Synechococcus sp. PCC 7002 ( Saunée et al. 2008. Shen et al. 2008.
Latest updates
http://cyanolyase.genouest.org/activity
Display the genomes, families and genes updated in the last. Model strains, Marine strains. Hosted by the GenOuest bioinformatics platform.
Help
http://cyanolyase.genouest.org/help
CyanoLyase is a manually curated sequence database gathering members of the phycobilin lyase family and related sequences. Accessing the raw data. Adding informations to the database. 1 Browsing the database. All the sequences stored in this database can be accessed by several means. This section describes each of them. In CyanoLyase, each sequence is attached to a genome. The genomes. Includes a full listing of genomes where at least one phycobilin lyase or a related protein sequence has been identified.
All phycobilin lyases and related proteins
http://cyanolyase.genouest.org/family/all/39
All phycobilin lyases and related proteins. This list allows users to retrieve any sequence from any organism included in the database by its locus tag/orf id or Genbank number when available. The R-PC-III present in this strain has a PCB:PEB ratio of 2:1 (Sidler, 1994). It is unclear whether WH7805 has CpcE/F or RpcE/F but the presence of CpcT (and not RpcT) however argues for the following pigmentation: alpha-84=PEB; beta-84=PCB; beta-155=PCB. Unclear whether this strain has CpcE/F or RpcE/F. Unclear w...
CyanoLyase
http://cyanolyase.genouest.org/protomatch/all_families
Protomatch is a bioinfomatic tool that allows to scan protein sequences to find occurences of motifs (see the Protomata web site. Here this tool can be used to scan an amino acid sequence of phycobilin lyase or any related protein (in fasta format) in order to check to which protomate of the CyanoLyase database it best matches. Select a protomaton file. Select an already generated protomaton file. File size is limited to 5Mb. Scanning with all the known lyase signatures. Use your own sequences.
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bioinformaticsdigitallibrary.blogspot.com
iBIRA: Integrated Bioinformatics Information Resource Access : Bioinformatics Databases
http://bioinformaticsdigitallibrary.blogspot.com/2013/05/bioinformatics-databases.html
IBIRA: Integrated Bioinformatics Information Resource Access. Thursday, May 23, 2013. Bioinformatics Databases Developed in 2012. A system for annotating alternative splice isoforms. A repository of bacterial small regulatory RNA. Cell line expression profiles by microarray analysis. Transcriptional regulation of lncRNA and microRNA genes from ChIP-Seq data. Chimeric RNAs of two or more different transcripts. Images, videos and animations of various cell types from diverse organisms. Domain structure pre...
bioinformaticsdigitallibrary.blogspot.com
iBIRA: Integrated Bioinformatics Information Resource Access : 05/01/2013 - 06/01/2013
http://bioinformaticsdigitallibrary.blogspot.com/2013_05_01_archive.html
IBIRA: Integrated Bioinformatics Information Resource Access. Thursday, May 23, 2013. Most Popular Bioinformatics Journals. Proceedings of the National Academy of Sciences of the United States of America. Molecular Systems Biology (Nature). Journal of Proteome Research. Journal of Computer-Aided Molecular Design. Proteins Structure Function and Genetics. Journal of Biomedical Informatics. Series on Advances in Bioinformatics and Computational Biology. Biochemical and Biophysical Research Communications.
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Cyanolab
Wolfgang R. Hess. Genetics and Experimental Bioinformatics. Institute of Biology III. Wolfgang.hess [at] biologie.uni-freiburg.de. Wolfgang, 22.02.2018. In the first weeks of 2018, Cyanolab has contributed to eight publications. In our paper " The host-encoded RNase E endonuclease as the crRNA maturation enzyme in a CRISPR Cas subtype III-Bv system. Please see also our press release. And the Freiburg Institute for Advanced Studies. In a joint publication with Shoshy Altuvia’s lab. Which has appeared in D...
Cyanolichens Index
Skip to main content. Log in using OpenID. Log in using OpenID. Welcome to Cyanolichens Index. Studies on the chemistry and distribution of North American lichens. Sarah Miller - 2015-02-26. Studies in the macrolichen flora of south west Greenland. Sarah Miller - 2015-02-26. Lichens: Collema and Leptogium. Sarah Miller - 2015-02-26. Recently Added Taxon Descriptions. Kerry Carfagno - 2015-03-03. Kerry Carfagno - 2015-03-03. Kerry Carfagno - 2015-03-03.
cyanoline.com
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CyanoLyase
CyanoLyase - Pelican ANR project. CyanoLyase is a manually curated sequence and amino acid motif database gathering all the different phycobilin lyases and related protein sequences available in public databases. Phycobilin lyases are enzymes that bind chromophores (phycobilins) to specific cysteinyl sites of phycobiliproteins (PBPs; Scheer and Zhao, 2008. PBPs are pigmented proteins organized in hexamers [(αβ). And in the atypical cyanobacterium Acaryochloris. Marquardt et al., 1997. The phycobilin comp...
Main Page - Cyanome.com
Welcome to openfree BiO network. BiO network is on-line information source for all the areas of biological research, technology, training, and business. Anyone is welcome to contribute to and use the content with maximum freedom. Please visit our sites that are listed in [1]. Some of our sites are:. Welcome to openfree BiO network. BiO network is on-line information source for all the areas of biological research, technology, training, and business. Please visit our sites that are listed in [1].
Main Page - Cyanome
Retrieved from " http:/ Cyanome.org/index.php/Main Page. Related Links [ Edit. This page was last modified on 2 January 2007, at 20:19. This page has been accessed 9,322 times. Content is available under BioLicense: the freest license.
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