cybertory.org

Educational Molecular Biology Simulations

Student Sequence Analysis Tools. Give us feedback and keep posted on Cybertory developments for both the open source and commercial platforms with a free CMS account. The Cybertory Development Team. The Cybertory Project is a collection of on-line educational simulations supporting a wide range of problem-based exercises in molecular biology, molecular genetics, and bioinformatics. Educational Molecular Biology Simulations.

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Educational Molecular Biology Simulations | cybertory.org Reviews

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Student Sequence Analysis Tools. Give us feedback and keep posted on Cybertory developments for both the open source and commercial platforms with a free CMS account. The Cybertory Development Team. The Cybertory Project is a collection of on-line educational simulations supporting a wide range of problem-based exercises in molecular biology, molecular genetics, and bioinformatics. Educational Molecular Biology Simulations.

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1 about cybertory

2 who we are

3 software platform

4 open source philosophy

5 terms and licenses

6 acknowledgements

7 exercises

8 paternity testing

9 forensic identification

10 computerized str analysis

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about cybertory,who we are,software platform,open source philosophy,terms and licenses,acknowledgements,exercises,paternity testing,forensic identification,computerized str analysis,pcr primer design,shotgun sequencing,hiv genotyping,online simulators

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Educational Molecular Biology Simulations | cybertory.org Reviews

https://cybertory.org

Student Sequence Analysis Tools. Give us feedback and keep posted on Cybertory developments for both the open source and commercial platforms with a free CMS account. The Cybertory Development Team. The Cybertory Project is a collection of on-line educational simulations supporting a wide range of problem-based exercises in molecular biology, molecular genetics, and bioinformatics. Educational Molecular Biology Simulations.

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cybertory.org

1

Cybertory Documentation

http://www.cybertory.org/downloads/docs/index.html

Here we present various publications and white papers describing Cybertory software, resources, and exercises. 2 NIH SBIR Poster. Simulated Genomics Exercises with the Cybertory Virtual Molecular Biology Laboratory. A PDF file of the poster presented at the NIH SBIR conference, Bethesda, 2005.

2

Microarray Scan Simulator

http://www.cybertory.org/downloads/mss/index.html

Background on Java Advanced Imaging (JAI ). Conventions for files to be used with the GUI interface. Files in this distribution. The Cybertory Microarray Scan Simulator. 2 Using the MSS. There are 3 ways to use this tool:. A GUI interface that collects data from a user to run the generator (this is the easiest). A commandline interface, where all parameters to run the generator are specified on the command line. An optional “extensions” jar file can be specified on the command line; this wou...If you wa...

3

HIV Genotyping

http://www.cybertory.org/exercises/seq2_hiv_genotyping/index.html

Staden's trace subtraction feature identifies sequence differences from the standard. Time required: approximately 3 hours. After preparing for and completing this exercise, you should be able to:. List the experimental parameters which affect the quality of a sequencing reaction. Describe the causes of failure of sequencing reactions by relating reaction conditions, primer design and template quality to the trace output from the virtual sequencer. HIV is the causal agent for Acquired Immunodeficiency Sy...

4

Student Sequence Analysis Tools

http://www.cybertory.org/resources/sequenceTools/index.html

Student Sequence Analysis Tools. Student Sequence Analysis Tools. Write messages in DNA. Translate nucleic acid sequences to protein. Find patterns in DNA. Student Sequence Analysis Tools. These are simple online tools for exploring and playing with various concepts related to biological sequences. 2 Write messages in DNA. The Secret Coder Tool. 3 Translate nucleic acid sequences to protein. The Transcription and Translation Tool. 4 Find patterns in DNA. The Sequence Pattern Finder.

5

Descriptions of Cybertory Downloads

http://www.cybertory.org/downloads/index.html

Download Programs and Documentation. Student Sequence Analysis Tools. Various programs, documents, and side projects are made available here for downloading. Is a simulation of the " Single-Molecule Real Time. SMRT) DNA sequencing process. It is implemented as a package in the R programming language. Here we present various publications and white papers describing Cybertory software, resources, and exercises. The Cybertory Microarray Scan Simulator. MSS) is a Java application that creates simulated micro...

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http://cybertory.com/FAQ.html

What is this site for? Top 10 reasons to learn molecular biology. Differences between dot com and dot org sites. Free software and teaching aids. Who is this site for? Is the Virtual Lab available in other languages? What can I do without signing up? Why don't my reactions work? Do you really expect me to take notes? Is there an overview of how to use the Virtual Lab interface? How do I move the Pipette? How do I move liquid into and out of the Pipette? Can tips really be contaminated? How do I register?

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About Cybertory

http://cybertory.com/About.html

What is this site for? Top 10 reasons to learn molecular biology. Differences between dot com and dot org sites. Free software and teaching aids. Who is this site for? Is the Virtual Lab available in other languages? What can I do without signing up? Why don't my reactions work? Do you really expect me to take notes? Is there an overview of how to use the Virtual Lab interface? How do I move the Pipette? How do I move liquid into and out of the Pipette? Can tips really be contaminated? How do I register?

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Welcome to my (simple) personal homepage! I am an Oracle/MySQL DBA and Linux sysadmin in the Montreal,QC area. Although I focus a lot of attention on databases and Linuxes I can't help getting interested in various tech subjects. Here are a few personal projects:. In 2009 I was dead certain of the success of Android and started to play around, eventually producing a small test app, and a game! My sheeva, with its external hard drive. Raspberry Pi with a custom board I made with a simple relay:. What a ba...

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Cybertory™ Virtual Molecular Biology Laboratory

What is this site for? Top 10 reasons to learn molecular biology. Differences between dot com and dot org sites. Free software and teaching aids. Who is this site for? Is the Virtual Lab available in other languages? What can I do without signing up? Why don't my reactions work? Do you really expect me to take notes? Is there an overview of how to use the Virtual Lab interface? How do I move the Pipette? How do I move liquid into and out of the Pipette? Can tips really be contaminated? How do I register?

cybertory.org

Educational Molecular Biology Simulations

Student Sequence Analysis Tools. Give us feedback and keep posted on Cybertory developments for both the open source and commercial platforms with a free CMS account. The Cybertory Development Team. The Cybertory Project is a collection of on-line educational simulations supporting a wide range of problem-based exercises in molecular biology, molecular genetics, and bioinformatics. Educational Molecular Biology Simulations.

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