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PconsD: Ultra rapid MQAP

Ultra rapid, accurate model quality assessment for protein structure prediction. PconsD is a very fast method for blind estimation of the objective quality (similarity to the native structure) of predicted models of protein structures (model quality assessment). It relies on stream computing algorithms for distance matrix comparison and is implemented in Python and OpenCL. It is designed to work on GPUs and has been tested on nVIDA GTX 460 and 560 platforms. PconsD has been benchmarked in CASP10. Additio...

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PconsD: Ultra rapid MQAP | d.pcons.net Reviews

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Ultra rapid, accurate model quality assessment for protein structure prediction. PconsD is a very fast method for blind estimation of the objective quality (similarity to the native structure) of predicted models of protein structures (model quality assessment). It relies on stream computing algorithms for distance matrix comparison and is implemented in Python and OpenCL. It is designed to work on GPUs and has been tested on nVIDA GTX 460 and 560 platforms. PconsD has been benchmarked in CASP10. Additio...

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PconsD: Ultra rapid MQAP | d.pcons.net Reviews

https://d.pcons.net

Ultra rapid, accurate model quality assessment for protein structure prediction. PconsD is a very fast method for blind estimation of the objective quality (similarity to the native structure) of predicted models of protein structures (model quality assessment). It relies on stream computing algorithms for distance matrix comparison and is implemented in Python and OpenCL. It is designed to work on GPUs and has been tested on nVIDA GTX 460 and 560 platforms. PconsD has been benchmarked in CASP10. Additio...

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bioinfo.se

Software

http://bioinfo.se/software

Protein evolution. Protein structure predictions. Bioinformatics. Our ambition is to develop better methods for prediction of protein structure and function. The most successful methods are provided as web-based servers. Web-services developed through EMBRACE. A program for homology modelling. A program for Hidden Markov Model-based homology scoring. Ultra rapid, accurate model quality assessment for protein structure prediction. A predictor of protein quality. Membrane Protein Topology Prediction Methods.

vls3d.com

Vls3d - 3D quality control

http://www.vls3d.com/links/bioinformatics/3d-structure-prediction/3d-quality-control

Doctoral school for therapeutic Innovation. Computational Biology and Chemistry. Protein, DNA, RNA, Glycan modeling. Protein-protein docking, template-based docking. Hotspots, Interace residues, PPI modulators. PPI databases, network. Binding pockets and ligand-pocket datasets. Peptides, antibodies, epitopes. Visualization - commercial tools. Chemistry toolkits and utilities. Manage collections - chemical space. ADMET- physchem predictions - related tools. Off-targets, drug repurposing. VADAR (Volume, Ar...

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d.pcons.net

PconsD: Ultra rapid MQAP

Ultra rapid, accurate model quality assessment for protein structure prediction. PconsD is a very fast method for blind estimation of the objective quality (similarity to the native structure) of predicted models of protein structures (model quality assessment). It relies on stream computing algorithms for distance matrix comparison and is implemented in Python and OpenCL. It is designed to work on GPUs and has been tested on nVIDA GTX 460 and 560 platforms. PconsD has been benchmarked in CASP10. Additio...

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