tamasnagy.com
Scholarly Markdown for Scientific Writing
http://tamasnagy.com/blog/scientific-writing-pandoc
Bioinformatics graduate student at UCSF. Interested in systems biology, image analysis, math, mountains, etc. Scholarly Markdown for Scientific Writing. Jan 11, 2014. Its WYSIWYG nature, its printed-page focused design. Its inconsistency, its primitive outlining and tagging features. Its lack of interoperability. The other option, LaTeX, isn’t much better:. It’s saddled with an exceedingly obtuse syntax. It uses hundreds of slightly different, inconsistently documented packages. This is the sad state of ...
tamasnagy.com
about
http://tamasnagy.com/about
Bioinformatics graduate student at UCSF. Interested in systems biology, image analysis, math, mountains, etc. Hi, I'm Tamas. I'm a graduate student in the Biomedical Informatics. Program at UCSF working in Orion Weiner. S lab I graduated with B.S. degrees in Math and Chemistry from the University of Kentucky in May 2015. In my time there I worked in the Dutch. I also had two summer internships: one as an AMGEN scholar in Jennifer Doudna. S group at Berkeley and one with Lucas Pelkmans.
tamasnagy.com
Predicting Drug Candidate Promiscuity
http://tamasnagy.com/blog/predicting-drug-candidate-promiscuity
Bioinformatics graduate student at UCSF. Interested in systems biology, image analysis, math, mountains, etc. Predicting Drug Candidate Promiscuity. Apr 5, 2014. For example, they noticed that Rescriptor, an HIV reverse transcriptase inhibitor, matched the ligand sets of histamine receptors, which could explain the skin rashes observed in patients who were on the drug. They used a variant of the Jaccard index. Known as the Tanimoto coefficient to calculate the similarity between pairs of compounds:.
tamasnagy.com
Life, Sans Facebook
http://tamasnagy.com/blog/life-sans-facebook
Bioinformatics graduate student at UCSF. Interested in systems biology, image analysis, math, mountains, etc. Life, Sans Facebook. Jan 18, 2014. It has been around three months since, after much back and forth in my head, I decided to permanently delete my Facebook account. In that time, I’ve been asked several times why I left, so I opted to write this short post to spell out my thoughts in a more succinct and thorough manner. So, why did I leave? And deleting isn’t actually deleting. Last but not least...