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Biological Database at MML, SJTU

Biological Database at MML, SJTU. At MML, SJTU is focused on in-depth mining of bacterial genomes by combination of bioinformatics approaches and molecular biology experimental techniques. The current work emphasizes:. I) applied bioinformatics for comparative analysis of bacterial mobile genome;. Ii) characterization of novel mobile genetic elements in. And other opportunistic bacterial pathogens that have developed antibiotic resistance, and the antibiotics-producing. Created on July-2011 沪交ICP备20111123.

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Biological Database at MML, SJTU | db-mml.sjtu.edu.cn Reviews

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Biological Database at MML, SJTU. At MML, SJTU is focused on in-depth mining of bacterial genomes by combination of bioinformatics approaches and molecular biology experimental techniques. The current work emphasizes:. I) applied bioinformatics for comparative analysis of bacterial mobile genome;. Ii) characterization of novel mobile genetic elements in. And other opportunistic bacterial pathogens that have developed antibiotic resistance, and the antibiotics-producing. Created on July-2011 沪交ICP备20111123.

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1 microbial bioinformatics group

2 klebsiella pneumoniae

3 streptomyces

4 secret6

5 secret4

6 iceberg

7 thiobase

8 tadb

9 coupons

10 reviews

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Biological Database at MML, SJTU | db-mml.sjtu.edu.cn Reviews

https://db-mml.sjtu.edu.cn

Biological Database at MML, SJTU. At MML, SJTU is focused on in-depth mining of bacterial genomes by combination of bioinformatics approaches and molecular biology experimental techniques. The current work emphasizes:. I) applied bioinformatics for comparative analysis of bacterial mobile genome;. Ii) characterization of novel mobile genetic elements in. And other opportunistic bacterial pathogens that have developed antibiotic resistance, and the antibiotics-producing. Created on July-2011 沪交ICP备20111123.

INTERNAL PAGES

db-mml.sjtu.edu.cn

1

SecReT6, T6SS database

http://db-mml.sjtu.edu.cn/SecReT6

SecReT6: a web-based resource for type VI secretion systems found in bacteria. Type VI secretion systems (T6SSs) are a class of sophisticated cell contact-dependent mechanisms involved in mediating antagonistic or synergistic communications between bacteria and/or bacteria and eukaryotes. These apparatuses have recently been found to be widely distributed among Gram-negative bacterial species. To date, only a few datasets of T6SS core components are available, such as KEGG. 35 and Google Chrome.

2

SecReT4

http://db-mml.sjtu.edu.cn/SecReT4

SecReT4: a web-based bacterial type IV secretion system resource. Source) is a comprehensive collection of information of type IV secretion systems (T4SSs) in bacteria. T4SSs are versatile assemblages that promote genetic exchange and/or effector translocation ( Cascales and Christie, 2003. With consequent impacts on pathogenesis and genome plasticity in turn. Here, we have organized information derived from the reported literature and. Current version: 1.0. Suggested Browsers: Mozilla Firefox.

3

ThioFinder

http://db-mml.sjtu.edu.cn/ThioFinder/browse_fam.php

Browse by Thiopeptide Genotype. Known thiopeptide entities along with their chemical structures. Biosynthetic gene cluster identified. Data derived from experimental literature. Genomics and Bioinformatics Group. State Key Laboratory of Microbial Metabolism, SJTU, China.

4

dndDB: the database of DNA Phosphorothioation

http://db-mml.sjtu.edu.cn/dndDB

5

ICEberg

http://db-mml.sjtu.edu.cn/ICEberg

ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Integrative and conjugative elements. ICEs) are a diverse group of mobile genetic elements found in both Gram-positive and Gram-negative bacteria. ICEs are self-transmissible elements that encode a full complement of machinery for conjugation as well as intricate regulatory systems to control excision from the chromosome and onward conjugative transfer [ Wozniak and Waldor, 2010. Ryan, et al., 2009;. Have now been d...

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Biological Database at MML, SJTU

Biological Database at MML, SJTU. At MML, SJTU is focused on in-depth mining of bacterial genomes by combination of bioinformatics approaches and molecular biology experimental techniques. The current work emphasizes:. I) applied bioinformatics for comparative analysis of bacterial mobile genome;. Ii) characterization of novel mobile genetic elements in. And other opportunistic bacterial pathogens that have developed antibiotic resistance, and the antibiotics-producing. Created on July-2011 沪交ICP备20111123.

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