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Regulatory Elements Database

This database provides a user interface to the results of Sheffield et al. (2013). The data is from hundreds of DNaseI-hypersensitivity and Affymetrix microarray experiments. On this web interface you can find:. Normalized DNaseI-hypersensitivity profiles for 112 human samples for 2.8 million individual regulatory elements. Normalized Affymetrix gene expression profiles for 112 human samples for about 30,000 Ensembl genes. Motif analysis results for enriched DNA motifs in regulatory clusters. MyoD1 regul...

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Regulatory Elements Database | db.databio.org Reviews

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This database provides a user interface to the results of Sheffield et al. (2013). The data is from hundreds of DNaseI-hypersensitivity and Affymetrix microarray experiments. On this web interface you can find:. Normalized DNaseI-hypersensitivity profiles for 112 human samples for 2.8 million individual regulatory elements. Normalized Affymetrix gene expression profiles for 112 human samples for about 30,000 Ensembl genes. Motif analysis results for enriched DNA motifs in regulatory clusters. MyoD1 regul...

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Regulatory Elements Database | db.databio.org Reviews

https://db.databio.org

This database provides a user interface to the results of Sheffield et al. (2013). The data is from hundreds of DNaseI-hypersensitivity and Affymetrix microarray experiments. On this web interface you can find:. Normalized DNaseI-hypersensitivity profiles for 112 human samples for 2.8 million individual regulatory elements. Normalized Affymetrix gene expression profiles for 112 human samples for about 30,000 Ensembl genes. Motif analysis results for enriched DNA motifs in regulatory clusters. MyoD1 regul...

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db.databio.org

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Regulatory Elements Database

http://db.databio.org/download.php

In the first version of the Regulatory Elements Database, the DNase data had a labels swapped, mostly on cell-type treatments: (HCF - HCFaa, HFF - HFF Myc, WI-38 - WI-38-TAM, and SKNMC - SKMC). This error has been fixed in the current version of the database and downloads (as of November 2015). TableS03-dhs-to-cluster.txt.tar.gz. TableS06-results tissueMalig v2.txt. TableS08-results sex v3.txt. DHS to gene connections:. Table S10- allGeneCorrelations100000.p05 v3.txt.gz. Raw DHS and Expression Signal.

2

Regulatory Elements Database

http://db.databio.org/geneDetail.php?ensemblID=myog

Distribution of linked clusters:. You may find it interesting if many of the connected DHS sites belong to the same cluster. Number of DHS sites in this cluster. Top 10 Correlated DHS Sites. P-values indiciate significant higher.

3

Regulatory Elements Database

http://db.databio.org/dhsDetail.php?dhsID=2063913

Belongs to SOM cluster: 173. P-values indiciate significant higher. Correlation 4 genes found.

4

Regulatory Elements Database

http://db.databio.org/geneDetail.php

Please choose a valid gene name.

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Regulatory Elements Database

http://db.databio.org/coordinate.php

Chromosome, start, stop:.

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fureylab.web.unc.edu

Regulatory Elements Database – Terry Furey Lab

http://fureylab.web.unc.edu/datasets/regulatory-elements-database

The University of North Carolina at Chapel Hill. Dept of Genetics, Dept of Biology, CCGS, LCCC. F-Seq: A Feature Density Estimator for High-Throughput Sequence Tags. GSAA: Gene Set Association Analysis. Network-based Large-scale Identification oF disTal eQTL (NetLIFT). Allele-Aware ALignments for the Investigation of GeNetic Effects on Regulation (AA-ALIGNER). Cluster Boost: Identifying Class Members in Severely Unbalanced Data. DNaseI Annotated Regions of Nucleosome Stability (DARNS).

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db.databio.org

Regulatory Elements Database

This database provides a user interface to the results of Sheffield et al. (2013). The data is from hundreds of DNaseI-hypersensitivity and Affymetrix microarray experiments. On this web interface you can find:. Normalized DNaseI-hypersensitivity profiles for 112 human samples for 2.8 million individual regulatory elements. Normalized Affymetrix gene expression profiles for 112 human samples for about 30,000 Ensembl genes. Motif analysis results for enriched DNA motifs in regulatory clusters. MyoD1 regul...

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