db.psort.org

PSORTdb :: Home

Welcome to PSORTdb 3.0. PSORTdb (part of the PSORT family. Is a database of protein subcellular localizations for bacteria and archaea that contains both information determined through laboratory experimentation (ePSORTdb dataset) and computational predictions (cPSORTdb dataset). This latest version of PSORTdb contains improved analyses for microbes with a wider diversity of cell envelope structures. For example, see a schematic of some different kinds of bacterial cell envelopes here. Pasteurella multoc...

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PSORTdb :: Home | db.psort.org Reviews

<META> DESCRIPTION

Welcome to PSORTdb 3.0. PSORTdb (part of the PSORT family. Is a database of protein subcellular localizations for bacteria and archaea that contains both information determined through laboratory experimentation (ePSORTdb dataset) and computational predictions (cPSORTdb dataset). This latest version of PSORTdb contains improved analyses for microbes with a wider diversity of cell envelope structures. For example, see a schematic of some different kinds of bacterial cell envelopes here. Pasteurella multoc...

<META> KEYWORDS

1 docs

2 updates

3 downloads

4 precomputed genomes/proteomes cpsortdb

5 aquifex aeolicus vf5

6 bacillus halodurans c 125

7 borrelia burgdorferi b31

8 caulobacter crescentus cb15

9 chlamydophila pneumoniae ar39

10 chlamydophila pneumoniae cwl029

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PSORTdb :: Home | db.psort.org Reviews

https://db.psort.org

Welcome to PSORTdb 3.0. PSORTdb (part of the PSORT family. Is a database of protein subcellular localizations for bacteria and archaea that contains both information determined through laboratory experimentation (ePSORTdb dataset) and computational predictions (cPSORTdb dataset). This latest version of PSORTdb contains improved analyses for microbes with a wider diversity of cell envelope structures. For example, see a schematic of some different kinds of bacterial cell envelopes here. Pasteurella multoc...

INTERNAL PAGES

db.psort.org

1

PSORTdb :: About PSORTdb

http://db.psort.org/about

PSORTdb is maintained by the Brinkman Laboratory. Located at Simon Fraser University in British Columbia, Canada. We invite you to send your questions and comments to psort-mail@sfu.ca. If you use PSORTdb in your research, we would greatly appreciate if you cited the following publication:. We're always looking for new proteins to add to our database! If you think you've got a good candidate, please submit. Interested in hearing about our latest updates?

2

PSORTdb :: Documentation

http://db.psort.org/docs

7) Bacterial cell envelopes. PSORTdb database belongs to PSORT. Family which provides resources and links for subcellular localization prediction. This latest version of PSORTdb contains improved analyses for microbes with a wider diversity of cell envelope structures. For example, see a schematic of some different kinds of bacterial cell envelopes here. If you use PSORTdb in your research, we would greatly appreciate if you cited the following publication:. Interested in hearing about our latest updates?

3

PSORTdb :: Updates :: Submit a Protein

http://db.psort.org/updates/wanted

If you'd like suggest one or more proteins of experimentally verified subcellular localization for incorporation into ePSORTdb, please complete the submission form below. Alternatively, send an email with the necessary information to psort-mail@sfu.ca. Your submission is subject to manual review before it is incorporated into the dataset. Please provide the following information with your submission:. Accession number (mandatory so that we can upload its sequence). GI of NCBI (if available).

4

PSORTdb :: Downloads

http://db.psort.org/downloads

PSORTb predictions for complete NCBI genomes can be accessed via the PSORTb Precomputed Genomes pages. Predictions are available for the following PSORTb versions:. PSORTb version 3.00. PSORTb version 2.00. Complete database downloads for PSORTb versions 3.00 and 2.00 are also available:. CPSORTb Version 3.00. Gz archive (94.53 Mb). Zip archive (94.53 Mb). Gz archive (247.65 Mb). Zip archive (247.65 Mb). Gz archive (8.60 Mb). Zip archive (8.60 Mb). CPSORTb Version 2.00. Gz archive (45.77 Mb).

5

PSORTdb :: Search :: Browse Genomes

http://db.psort.org/browse

Gram negative (without outer membrane). Gram positive (with outer membrane). If you want to obtain predictions for all genomes currently analyzed, you can find the results here. Browsing 7281 results (Page 1 of 292). Deinococcus soli' Cha et al. 2014 strain N5, complete genome. Acetobacter pasteurianus 386B plasmid Apa386Bp1, complete sequence. Acetobacter pasteurianus 386B plasmid Apa386Bp2, complete sequence. Acetobacter pasteurianus 386B plasmid Apa386Bp3, complete sequence. Acetobacter pasteurianus I...

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psort.org

PSORTb Subcellular Localization Prediction Tool - version 3.0

http://www.psort.org/psortb/index.html

Submit a Sequence to PSORTb version 3.0.2. Based on a study last performed in 2010, PSORTb v3.0.2 is the most precise bacterial localization prediction tool available. PSORTb v3.0.2 has a number of improvements. Over PSORTb v2.0.4. Version 2 of PSORTb is maintained here. You can currently submit one or more Gram-positive or Gram-negative bacterial sequences or archaeal sequences in FASTA format (? Limitations of PSORTb v.3.0. Docker PSORTb web service. Choose an organism type (? Choose Gram stain (?

nar.oxfordjournals.org

PSORTdb: a protein subcellular localization database for bacteria

http://nar.oxfordjournals.org/cgi/content/abstract/33/suppl_1/D164

View Current Issue (Volume 44 Issue 14 19 August 2016). PSORTdb: a protein subcellular localization database for bacteria. Jennifer L. Gardy. Matthew R. Laird. Fiona S. L. Brinkman. Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada V5A 1S6 and. URBM, F.U.N.D.P Rue de Bruxelles, 61, B-5000, Namur, Belgium. To whom correspondence should be addressed. Tel: 1 604 291 5646; Fax: 1 604 291 5583; Email: brinkman{at}sfu.ca. 2005, the authors. Alert me when cited.

pseudomonas-syringae.org

PPI - related links

http://www.pseudomonas-syringae.org/links.htm

P s pv. syringae. P s pv. phaseolicola. Links to offsite resources and databases. Displays interactions of individual effectors from. And other bacterial pathogens on various plant hosts (hosted by UC-Davis). Select strain of interest at site. PAMDB - Plant Associated and Environmental Microbes Database. Multilocus sequence typing and analysis database designed for identification of plant associated and environmental microbes. Select strain of interest at site. Select strain of interest at site. Genomes ...

mgcv.cmbi.ru.nl

MGcV: Documentation

http://mgcv.cmbi.ru.nl/help.html

Your browser must support SVG, we advise you to use a recent version of Chrome or Firefox. MGcV is compatible with Internet Explorer (IE) 9, older IE versions are not working. Try updating your browser to the most recent version. Copy/paste the input file containing gene/genomic region identifiers and select the appropriate file type. Alternatively, use the identifier search ("Identifier")- or BLAST- buttons to search for relevant gene identifiers. Click "Visualize context". The data input-box defines wh...

psort.org

PSORTb Datasets

http://www.psort.org/dataset/index.html

Datasets of Proteins of Known Localization. This website contains links to specific datasets used to train different versions of PSORTb as well as datasets created for software evaluation purposes. For more advanced querying and downloading subsets of data, please go to PSORTdb. In place of the datasets on this page. Datasets created by other groups are now linked to in the list of resources on the PSORT.org Index Page. PSORTdb Dataset (Brinkman Lab):. PSORTb v.1.0. PSORTb v.1.1. PSORTb v.2.0. PSORTb v&#...

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db.psort.org

PSORTdb :: Home

Welcome to PSORTdb 3.0. PSORTdb (part of the PSORT family. Is a database of protein subcellular localizations for bacteria and archaea that contains both information determined through laboratory experimentation (ePSORTdb dataset) and computational predictions (cPSORTdb dataset). This latest version of PSORTdb contains improved analyses for microbes with a wider diversity of cell envelope structures. For example, see a schematic of some different kinds of bacterial cell envelopes here. Pasteurella multoc...

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