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dcemriAn R Package for the Quantitative Analysis of Dynamic Contrast-Enhanced MRI
http://dcemri.blogspot.com/
An R Package for the Quantitative Analysis of Dynamic Contrast-Enhanced MRI
http://dcemri.blogspot.com/
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dcemri | dcemri.blogspot.com Reviews
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An R Package for the Quantitative Analysis of Dynamic Contrast-Enhanced MRI
dcemri.blogspot.com
dcemri: December 2013
http://dcemri.blogspot.com/2013_12_01_archive.html
An R Package for the Quantitative Analysis of Dynamic Contrast-Enhanced MRI. The R package dcemriS4. Provides routines for the quantitative analysis of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI), along with quantification of diffusion-weighted MRI (DWI) and quantitative T2 maps from CPMG sequences. The latest version of dcemriS4. Improved usage of FORTRAN code. Fixed broken links in the vignette. Fixed bugs in the definition of empirical arterial input functions (AIFs).
dcemri: October 2010
http://dcemri.blogspot.com/2010_10_01_archive.html
An R Package for the Quantitative Analysis of Dynamic Contrast-Enhanced MRI. Is a collection of functions, with examples and documentation, that allows one to perform voxel-wise quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI) or diffusion-weighted imaging (DWI) data. The primary application of this methodology is oncology, but applications to other therapeutic areas (such as neuroscience or inflammation) are equally possible. The latest version of dcemriS4. Added kety.orton.exp.
dcemri: December 2011
http://dcemri.blogspot.com/2011_12_01_archive.html
An R Package for the Quantitative Analysis of Dynamic Contrast-Enhanced MRI. The R package dcemriS4. Provides routines for the quantitative analysis of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI), along with quantification of diffusion-weighted MRI (ADC = apparent diffusion coefficient) and quantitative T2 maps from Carr-Purcell-Meiboom-Gill (CPMG) sequences. The latest version (0.46) has been submitted to CRAN and will hopefully be available for download soon. This blog covers all asp...
dcemri: Data-driven arterial input functions
http://dcemri.blogspot.com/2010/12/data-driven-arterial-input-functions.html
An R Package for the Quantitative Analysis of Dynamic Contrast-Enhanced MRI. Data-driven arterial input functions. I haven't devoted any time/effort/code to the extraction and parameter estimation of arterial input functions (AIFs) for DCE-MRI in either the vignette or the submission to JSS. Frankly, I wanted to communicate the main features of the R. The function extract.aif(). Requires a seed voxel to perform a three-dimensional region-growing algorithm based on correlation. I use FSLView. Contrast-age...
dcemri: January 2010
http://dcemri.blogspot.com/2010_01_01_archive.html
An R Package for the Quantitative Analysis of Dynamic Contrast-Enhanced MRI. WriteNIfTI() is fully compatible with FSLView. With the NIfTI-1 header extensions the world is your oyster. We decided that one use for such a capability is to keep an audit trail of all operations performed on the image data volume. This is a key feature in the dcemriS4. We now have a file "img nifti.nii.gz" that is available to us and using a utility in FSL we can investigate the attributes of this file. Subscribe to: Posts (A...
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rigorousanalytics.blogspot.com
Rigorous Analytics: December 2011
http://rigorousanalytics.blogspot.com/2011_12_01_archive.html
Open-Source Solutions for Medical Image Analysis. Magnetic Resonance Imaging in R. Volume 44 of the Journal of Statistical Software. Was published in October 2011. The special volume on “Magnetic Resonance Imaging in R” features articles and packages related to a variety of imaging modalities:. The papers describe the methodology, software implementation and provide comprehensive examples and data. A complete list of the issues is:. Special Volume on Magnetic Resonance Imaging in R. Gregory Z. Ferl.
rigorousanalytics.blogspot.com
Rigorous Analytics: Magnetic Resonance Imaging in R
http://rigorousanalytics.blogspot.com/2011/12/magnetic-resonance-imaging-in-r.html
Open-Source Solutions for Medical Image Analysis. Magnetic Resonance Imaging in R. Volume 44 of the Journal of Statistical Software. Was published in October 2011. The special volume on “Magnetic Resonance Imaging in R” features articles and packages related to a variety of imaging modalities:. The papers describe the methodology, software implementation and provide comprehensive examples and data. A complete list of the issues is:. Special Volume on Magnetic Resonance Imaging in R. Gregory Z. Ferl.
rigorousanalytics.blogspot.com
Rigorous Analytics: December 2010
http://rigorousanalytics.blogspot.com/2010_12_01_archive.html
Open-Source Solutions for Medical Image Analysis. Oronifti 0.2.4. Contains functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics. Orthographic display of structural MRI acquisition from the AFNI data collection (afni anat1 orig.BRIK). The latest version of oro.nifti. 024) has been submitted to CRAN. And is available on R-Forge. Now New features include:. Package) and nifti-S4 classes.
rigorousanalytics.blogspot.com
Rigorous Analytics: June 2010
http://rigorousanalytics.blogspot.com/2010_06_01_archive.html
Open-Source Solutions for Medical Image Analysis. Oronifti 0.1.5. The latest version of oro.nifti. 015) has been released on CRAN. New features include:. Reduced overall size of the package by 50%. Minor improvements; for example, the XML package is no longer required as indicated from the DESCRIPTION file. Please use the mailing list for any suggestions and/or concerns. Orodicom 0.2.6. The latest version of oro.dicom. 026) has been released on CRAN. New features/improvements include:.
rigorousanalytics.blogspot.com
Rigorous Analytics: March 2010
http://rigorousanalytics.blogspot.com/2010_03_01_archive.html
Open-Source Solutions for Medical Image Analysis. Oronifti 0.1.4. The latest release of oro.nifti. 014) has been released on CRAN. New features include:. Added text capability in the (unused) fourth pane in orthographic(). A vignette is now included (taken from dcemriS4. Orodicom 0.2.5. The latest version of oro.dicom. 025) has been released on CRAN. New features include:. Added "mosaic" capability when creating 3D arrays from DICOM. DicomTable() now accepts single DICOM file. Is the international "stand...
rigorousanalytics.blogspot.com
Rigorous Analytics: Using the Debug Option in readDICOMfile()
http://rigorousanalytics.blogspot.com/2014/09/using-debug-option-in-readdicomfile.html
Open-Source Solutions for Medical Image Analysis. Using the Debug Option in readDICOMfile(). Some recent activity in stackoverflow. Was brought to my attention. Specifically, several questions were raised with reading files into R using readDICOMFile(). In the oro.dicom. Files, they were created in the early 1990s around the same time that the DICOM Standard. The result of these questions. I would like to raise the profile of a useful option in readDICOMFile() ,. The debug = TRUE. Line #13) we can overri...
rigorousanalytics.blogspot.com
Rigorous Analytics: oro.dicom 0.3.3
http://rigorousanalytics.blogspot.com/2011/12/orodicom-033.html
Open-Source Solutions for Medical Image Analysis. Orodicom 0.3.3. The R package oro.dicom. Contains data input/output functions for medical imaging data that conform to the Digital Imaging and Communications in Medicine. DICOM) standard, part of the Rigorous Analytics bundle. The latest version of oro.dicom. 033) contains a substantial number of updates:. DicomInfo = readDICOMFile and dicomSeparate = readDICOM, but the old function calls still exist for now to smooth the transition. Oronifti 0.3.1. Orodi...
rigorousanalytics.blogspot.com
Rigorous Analytics: September 2014
http://rigorousanalytics.blogspot.com/2014_09_01_archive.html
Open-Source Solutions for Medical Image Analysis. Using the Debug Option in readDICOMfile(). Some recent activity in stackoverflow. Was brought to my attention. Specifically, several questions were raised with reading files into R using readDICOMFile(). In the oro.dicom. Files, they were created in the early 1990s around the same time that the DICOM Standard. The result of these questions. I would like to raise the profile of a useful option in readDICOMFile() ,. The debug = TRUE. Line #13) we can overri...
rigorousanalytics.blogspot.com
Rigorous Analytics: February 2010
http://rigorousanalytics.blogspot.com/2010_02_01_archive.html
Open-Source Solutions for Medical Image Analysis. Orodicom 0.2.4. The R package oro.dicom. Is a major revision, and improvement, on the previous package DICOM. Uploading only header information (for restricted memory). Reading implicit value representations (VR's). Parsing SequenceItem tags (undefined lengths are allowed). Integration with oro.nifti. Provided below is a straightforward application of the oro.dicom. Package to an example data set from the ADNI. Alzheimer's Disease Neuroimaging Initiative).
rigorousanalytics.blogspot.com
Rigorous Analytics: oro.dicom 0.4.0
http://rigorousanalytics.blogspot.com/2013/12/orodicom-040.html
Open-Source Solutions for Medical Image Analysis. Orodicom 0.4.0. The R package oro.dicom. Contains data input/output functions for medical imaging data that conform to the Digital Imaging and Communications in Medicine. DICOM) standard, part of the Rigorous Analytics bundle. The latest version of oro.dicom. 040) contains a substantial update:. The function subroutines of readDICOMFile() have been re-written from scratch. Please contact me at rigorousanalytics@gmail.com. Or post messages on this blog.
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dcemri
An R Package for the Quantitative Analysis of Dynamic Contrast-Enhanced MRI. The R package dcemriS4. Provides routines for the quantitative analysis of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI), along with quantification of diffusion-weighted MRI (DWI) and quantitative T2 maps from CPMG sequences. The latest version of dcemriS4. Improved usage of FORTRAN code. Fixed broken links in the vignette. Fixed bugs in the definition of empirical arterial input functions (AIFs). Added dependen...
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Friday, April 15, 2011. The Incredible Bouncing Egg. Did you know that eggs can bounce? Raw eggs - not cooked.and yes, I said bounce! Well, K2 students bounced a raw egg today! Everyone had a chance to bounce it and then we tried to bounce it at a higher level. After a certain height, it popped! We discussed why and what came out of the "egg" once it popped. You child can tell you all about it and you can recreate the experiment at home. Thank you for all the empty egg shells that you have sent in! We ha...
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Dustin's Emergency Medical Services Blog. Saving Lives Is My Mission! What is an EMT? Posted by: Dustin Cox, Colorado State University-Pueblo. December 28, 2010. I hope you had a very Merry Christmas this year and I hope you got a safe but fun new years planned! Christmas here in Colorado was nice! So I wanted to bring up a call that for me does not happen to often here in Colorado that actually happened in Oklahoma on Christmas Day. Have you had a incident in your are that was like this? On arrival the ...
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