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Homepage — DiffusionKit 1.2.1 documentation

Welcome to Brainnetome DiffusionKit’s Homepage. A full pipeline for (pre-)processing and visualization for diffusion MRI data. Cross-platform support and a small installation size without 3rd party dependency. Utilize a graphical interface along with command-line programs that enables easy operation and batch processing. It was developed as a cross-platform framework, using VTK [2]. And the constrained spherical deconvolution (CSD) for HARDI reconstruction in MRtrix [5]. Please see the navigation sidebar...

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Welcome to Brainnetome DiffusionKit’s Homepage. A full pipeline for (pre-)processing and visualization for diffusion MRI data. Cross-platform support and a small installation size without 3rd party dependency. Utilize a graphical interface along with command-line programs that enables easy operation and batch processing. It was developed as a cross-platform framework, using VTK [2]. And the constrained spherical deconvolution (CSD) for HARDI reconstruction in MRtrix [5]. Please see the navigation sidebar...
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Homepage — DiffusionKit 1.2.1 documentation | diffusion.brainnetome.org Reviews

https://diffusion.brainnetome.org

Welcome to Brainnetome DiffusionKit’s Homepage. A full pipeline for (pre-)processing and visualization for diffusion MRI data. Cross-platform support and a small installation size without 3rd party dependency. Utilize a graphical interface along with command-line programs that enables easy operation and batch processing. It was developed as a cross-platform framework, using VTK [2]. And the constrained spherical deconvolution (CSD) for HARDI reconstruction in MRtrix [5]. Please see the navigation sidebar...

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1

Download and Install — DiffusionKit 1.2.1 documentation

http://diffusion.brainnetome.org/en/latest/download.html

Latest Release (v1.4-r161127). Example Data and Test Script. For MS Windows OS. Latest Release (v1.4-r161127). For our previously compiled packages. Linux Binary Package (x86-64). Linux Binary Package (x86-64). Example Data and Test Script. List File: list.txt. Subject 01: sub01.tar.gz. Subject 02: sub02.tar.gz. Brain Atlas: atlas.tar.gz. Test Script [ process advanced.sh. List File: list.txt. Subject 01: sub01.tar.gz. Subject 02: sub02.tar.gz. Brain Atlas: atlas.tar.gz. Or process primary.sh. These two ...

2

Homepage — DiffusionKit 1.2.1 documentation

http://diffusion.brainnetome.org/en/stable

Welcome to Brainnetome DiffusionKit’s Homepage. A full pipeline for (pre-)processing and visualization for diffusion MRI data. Cross-platform support and a small installation size without 3rd party dependency. Utilize a graphical interface along with command-line programs that enables easy operation and batch processing. It was developed as a cross-platform framework, using VTK [2]. And the constrained spherical deconvolution (CSD) for HARDI reconstruction in MRtrix [5]. Please see the navigation sidebar...

3

License — DiffusionKit 1.2.1 documentation

http://diffusion.brainnetome.org/en/latest/license.html

The licenses of the third party toolboxes. BET (Brain Extraction Tool) v2.1 - FMRIB Analysis Group, Oxford. Dcm2nii - Chris Rorden’s dcm2niix, version 24Nov2014. NiftyReg v1.3.9 - University College London, UK. This software is provided ‘as-is’, without any express or implied warranty. In no event will the authors be held liable for any damages arising from the use of this software. Altered versions must be plainly marked as such, and must not be misrepresented as being the original software. The License...

4

FAQs — DiffusionKit 1.2.1 documentation

http://diffusion.brainnetome.org/en/latest/faq.html

1 Where can I download example data? 2 Why images and fibers are not properly aligned in my case? 3 How to extract the gradient table if the dcm2nii/MRIcron fails? 1 Where can I download example data? We provide a group of test data. To test the software, and the data was also used in [11]. 2 Why images and fibers are not properly aligned in my case? This typically happens when nifti image headers are modified before generating fiber. In DiffusionKit, a command named. Bninfo data.nii.gz. The dcm2nii/MRIc...

5

Screenshots — DiffusionKit 1.2.1 documentation

http://diffusion.brainnetome.org/en/latest/screenshot.html

Tensor and ODF/FOD Visualization. Tensor and ODF/FOD Visualization. Click to see high resolution images]. On Read the Docs. Free document hosting provided by Read the Docs.

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Members

http://www.brainnetome.org/en/brainnetomeproject/members.html

Tianzi Jiang, Chief. Dr Tianzi Jiang is the Professor and Director of Sino-French Laboratory for Computer Science, Automation, and Applied Mathematics (LIAMA) and National Laboratory of Pattern Recognition (NLPR) at the Institute of Automation of the Chinese Academy of Sciences. His research interests include computational brain imaging, medical image understanding and analysis, imaging genomics, bioinformatics,applications in neurological and psychiatric diseases. Yong Fan, Ph.D, Professor. Dr Yong Fan ...

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Brainnetome Technique

http://www.brainnetome.org/en/brainnetome-tech.html

Fructose and urea induced transparency- FRUIT Protocol. Dr J Michael Herrmann- Self-organised Criticality in Neural Systems and Autonomous Robots. New paper in Scientific Reports - Altered Intranetwork and Internetwork Functional Connectivity in Type 2 Diabetes Mellitus With and Without Cognitive Impairment. New paper in J Biomed Opt - Correlation between electrical and hemodynamic responses during visual stimulation with graded contrasts.

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bingliu

http://www.brainnetome.org/en/bingliu

Bing Liu, PhD, Professor. National Laboratory of Pattern Recognition. The Chinese Academy of Sciences. Beijing 100190, P. R. China. Phone: 86 10 82544770. Fax: 86 10 6255 1993. Email: This email address is being protected from spambots. You need JavaScript enabled to view it. Xiaolong Zhang, Yue Cui, Wen Qin, Yan Tao, Ji Li, Chunshui Yu, Tianzi Jiang. Polygenic Risk for Schizophrenia Influences Cortical Gyrification in 2 Independent General Populations. 2016, in press. Brain Structure and Function. Tianz...

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Institute of Automation, the Chinese Academy of Sciences. Institute of Psychology, the Chinese Academy of Sciences. Wuhan Institute of Physics and Mathematics, the Chinese Academy of Sciences. Kunming Institute of Zoology, the Chinese Academy of Sciences. National University of Defense Technology. University of Electronic Science and Technology of China. The Second Affiliated Hospital of Xinxiang Medical University. The Sixth Affiliated Hospital of Peking University. Hui Long Guan Hospital. New paper in ...

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Student

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This email address is being protected from spambots. You need JavaScript enabled to view it. His current research interests include medicine image processing and computer vision. This email address is being protected from spambots. You need JavaScript enabled to view it. His current research interests include improving meta-analysis method, Independent component analysis, mining functional MRI, dynamic function of brain network. His current research interests include fMRI, DTI and brain parcellation.

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Lecture-2013

http://www.brainnetome.org/en/brainnetomelecture/lecture-2013.html

Title: Brain Does Not Use a Deep Cascade of Areas: The Deep Learning Architectures Are Shortsighted. Speaker: Prof. Juyang Weng. Chair: Prof. Tianzi Jiang. Location: The first meeting room, 3rd floor of the Intelligence Building. Time: 09:00-10:00 Dec. 30, 2013. Title: Vesicle Trafficking Jams and The Pathogenesis of Neurological Disorders. Speaker: Prof. Wei Li. Chair: Prof. Tianzi Jiang. Location: The first meeting room, 3rd floor of the Intelligence Building. Time: 09:00-10:00 Dec. 24, 2013. Towards n...

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This email address is being protected from spambots. You need JavaScript enabled to view it. This email address is being protected from spambots. You need JavaScript enabled to view it. This email address is being protected from spambots. You need JavaScript enabled to view it. This email address is being protected from spambots. You need JavaScript enabled to view it. This email address is being protected from spambots. You need JavaScript enabled to view it. New paper in Cortex - Convergent and diverge...

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This email address is being protected from spambots. You need JavaScript enabled to view it. This email address is being protected from spambots. You need JavaScript enabled to view it. This email address is being protected from spambots. You need JavaScript enabled to view it. This email address is being protected from spambots. You need JavaScript enabled to view it. This email address is being protected from spambots. You need JavaScript enabled to view it. New paper in Cortex - Convergent and diverge...

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Brainnetome

http://www.brainnetome.org/en/brainnetomeproject/brainnetome.html

Identification of Brain Networks. Dynamics and Characteristics of Brain Networks. The Brainnetome will investigate dynamics and characteristics of brain networks during development, aging and evolution processes and how they are affected by learning, training, language, culture, diseases, stimuli, and so on. This part of the Brainnetome Project is synergic with the Physiome Project. Network Manifestation of Functions and Malfunctions of the Brain. Genetic Basis of Brain Networks. The Brainnetome Project ...

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Homepage — DiffusionKit 1.2.1 documentation

Welcome to Brainnetome DiffusionKit’s Homepage. A full pipeline for (pre-)processing and visualization for diffusion MRI data. Cross-platform support and a small installation size without 3rd party dependency. Utilize a graphical interface along with command-line programs that enables easy operation and batch processing. It was developed as a cross-platform framework, using VTK [2]. And the constrained spherical deconvolution (CSD) for HARDI reconstruction in MRtrix [5]. Please see the navigation sidebar...

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