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DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

Return to submitted job. Copy and paste gene names. Or accession numbers) ( example. Gene symbols (GATA2, PAX6, etc). GenBank mRNA (AK, NM , BC, X, etc). Nucleotide RefSeq (NM ). Protein RefSeq (NP ). UCSC Known Genes (uc000aaa.1). Select the source of background genes:. Copy and paste background genes. Top 3 ECRs promoter ECRs [default]. UTR ECRs promoter ECRs. NCBI DCODE.org Comparative Genomics Developments ( www.dcode.org.

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DiRE :: identification of DIstant Regulatory Elements of co-regulated genes | dire.dcode.org Reviews

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Return to submitted job. Copy and paste gene names. Or accession numbers) ( example. Gene symbols (GATA2, PAX6, etc). GenBank mRNA (AK, NM , BC, X, etc). Nucleotide RefSeq (NM ). Protein RefSeq (NP ). UCSC Known Genes (uc000aaa.1). Select the source of background genes:. Copy and paste background genes. Top 3 ECRs promoter ECRs [default]. UTR ECRs promoter ECRs. NCBI DCODE.org Comparative Genomics Developments ( www.dcode.org.

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DiRE :: identification of DIstant Regulatory Elements of co-regulated genes | dire.dcode.org Reviews

https://dire.dcode.org

Return to submitted job. Copy and paste gene names. Or accession numbers) ( example. Gene symbols (GATA2, PAX6, etc). GenBank mRNA (AK, NM , BC, X, etc). Nucleotide RefSeq (NM ). Protein RefSeq (NP ). UCSC Known Genes (uc000aaa.1). Select the source of background genes:. Copy and paste background genes. Top 3 ECRs promoter ECRs [default]. UTR ECRs promoter ECRs. NCBI DCODE.org Comparative Genomics Developments ( www.dcode.org.

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DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

https://dire.dcode.org/index.php?id=example

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DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

https://dire.dcode.org/cite.php

Return to submitted job. If you find the results useful for your research, please cite DiRE as. Gotea, V. and I. Ovcharenko ( 2008. DiRE: identifying distant regulatory elements of co-expressed genes. Nucleic Acids Research. Doi:10.1093/nar/gkn300 [ Abstract. NCBI DCODE.org Comparative Genomics Developments ( www.dcode.org.

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DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

https://dire.dcode.org/details.php

Return to submitted job. Regulation of gene expression in eukaryotic genomes is established through a complex cooperative activity of proximal promoters and distant regulatory elements (REs) such as enhancers, repressors, and silencers. We developed a web server called DiRE. Lements, based on the Enhancer Identification (EI) method. Allows users to start their analysis with raw microarray expression data. Continue to: screen shots.

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DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

https://dire.dcode.org/return.php

Return to submitted job. Please enter a 16-digit request ID. To return to your previously submitted job:. NCBI DCODE.org Comparative Genomics Developments ( www.dcode.org.

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DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

https://dire.dcode.org/screenshots.php

Return to submitted job. You'll see this screen while DiRE is running. Note the job ID at the top, you can use it later to return to your query. It can take up to 30 minutes for a job to complete, depending on the number of signal and background genes supplied. After a successful completion of your query, DiRE will display a results page, divided into four sections as follows:. If you didn't copy this 16-digit number from the running screen, do it now! In a nutshell, here is what you were looking for!

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bitnos.com

Bitnos - Transcription Factors Analysis

http://www.bitnos.com/transcription-factors-analysis

Searching transcription factor binding sites. Category: Transcription factors analysis. Given a DNA sequence, TF Search returns potential transcriptional factor binding sites on the sequence. Category: Transcription factors analysis. Tfsitescan is intended for promoter sequence analysis and works best with sequences of 500 nt. Category: Transcription factors analysis. Category: Transcription factors analysis. Category: Transcription factors analysis. Analysis of transcription factor binding sites. Catego...

bitnos.com

Bitnos - Top

http://www.bitnos.com/top

Search nucleotide subjects using a nucleotide query. BLAST nucleotide (BLASTN) searches nucleotide subjects using a nucleotide query. Registration not required. Click here for more informations. Searching transcription factor binding sites. Category: Transcription factors analysis. Given a DNA sequence, TF Search returns potential transcriptional factor binding sites on the sequence. Registration not required. Click here for more informations. Category: Transcription factors analysis. Pubmed allows: to s...

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DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

Return to submitted job. Copy and paste gene names. Or accession numbers) ( example. Gene symbols (GATA2, PAX6, etc). GenBank mRNA (AK, NM , BC, X, etc). Nucleotide RefSeq (NM ). Protein RefSeq (NP ). UCSC Known Genes (uc000aaa.1). Select the source of background genes:. Copy and paste background genes. Top 3 ECRs promoter ECRs [default]. UTR ECRs promoter ECRs. NCBI DCODE.org Comparative Genomics Developments ( www.dcode.org.

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