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Thursday, 29 September 2011. Methods, results visualization. As there are many gene sets (different classification of genes from different aspects) available. It might be interesting to compare all the different classifications to see how they are related with each other (e.g. GO and pathway maps). Genesets can be downloaded from GenesetDB, MsigBD. Maybe compile a list of experimentally identified gene sets from publications (such as disease related genes). Thursday, 7 July 2011. Thursday, 30 June 2011.

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Thursday, 29 September 2011. Methods, results visualization. As there are many gene sets (different classification of genes from different aspects) available. It might be interesting to compare all the different classifications to see how they are related with each other (e.g. GO and pathway maps). Genesets can be downloaded from GenesetDB, MsigBD. Maybe compile a list of experimentally identified gene sets from publications (such as disease related genes). Thursday, 7 July 2011. Thursday, 30 June 2011.

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6 gather

7 further work

8 posted by

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learning,gene set analysis,tools,david,msigdb,gather,further work,posted by,yahan,no comments,labels mysql,remote access,title=onlinehelp contents,labels svn,export debian frontend=noninteractive,sudo add apt repository ppa freenx team,sudo apt get update

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learning | django-ma.blogspot.com Reviews

https://django-ma.blogspot.com

Thursday, 29 September 2011. Methods, results visualization. As there are many gene sets (different classification of genes from different aspects) available. It might be interesting to compare all the different classifications to see how they are related with each other (e.g. GO and pathway maps). Genesets can be downloaded from GenesetDB, MsigBD. Maybe compile a list of experimentally identified gene sets from publications (such as disease related genes). Thursday, 7 July 2011. Thursday, 30 June 2011.

INTERNAL PAGES

django-ma.blogspot.com

1

learning: use phpMyAdmin for mysql database management

http://django-ma.blogspot.com/2011/07/use-phpmyadmin-for-mysql-database.html

Thursday, 7 July 2011. Use phpMyAdmin for mysql database management. Visit url/phpmyadmin/ to access the management interface. Remote access, can import/export data, etc. Subscribe to: Post Comments (Atom). Login templates url name. Use phpMyAdmin for mysql database management. View my complete profile.

2

learning: best way to remove ubuntu from win 7

http://django-ma.blogspot.com/2011/05/best-way-to-remove-ubuntu-from-win-7.html

Tuesday, 31 May 2011. Best way to remove ubuntu from win 7. Ubuntu was installed from CD and in a different partition (for installation inside windows, can just simply remove the ubuntu file and use easybcd to change the bootloader). 2 choose "Bootloader Setup",. Make sure W7 partition is "active" and select. Reboot and use "partition wizard" to deleter the ubuntu partition and create a new partition in NTFS to restore the disk space. 4 reboot and done! Install windows inside ubuntu. Django on Amazon AWS.

3

learning: February 2010

http://django-ma.blogspot.com/2010_02_01_archive.html

Tuesday, 23 February 2010. Visualiztion of SBML models (Biomodels database). Auto generated layout is useless (ex BIOMD0000000217). A simple way to creat a more readable layout might be to hide or split the spcies with fixed concentration. Monday, 22 February 2010. Python packages for FBA analysis. Based on GLPK (also used in the COBRA toolbox by UCSD). Http:/ en.wikipedia.org/wiki/GNU Linear Programming Kit. Subscribe to: Posts (Atom). Login templates url name. Python packages for FBA analysis.

4

learning: django on Amazon AWS

http://django-ma.blogspot.com/2011/05/django-on-amazon-aws.html

Thursday, 26 May 2011. Django on Amazon AWS. The instance is ubuntu 64, public domain: ec2-50-19-138-92.compute-1.amazonaws.com. 1 in the AWS consol, add new security groups or edit the default one, add at least http and ssh access. 2 use ssh -i djangotest.pem ubuntu@ec2-50-19-138-92.compute-1.amazonaws.com to link to the machine. Djangotest.pem is the private key file, need to copy to a linux folder (not in NTFS) and chnage permission to 0600. ubuntu is the default user with password. 9 edit the apache ...

5

learning: June 2011

http://django-ma.blogspot.com/2011_06_01_archive.html

Thursday, 30 June 2011. Google code SVN access. In ubuntu using rapidSVN (also version on windows). 1 start a new google project from http:/ code.google.com/hosting/createProject. 2 create a new folder on computer and check out a local working copy of the new project (still empty) to the new folder (menu: repository/checkout). More details see the rapidSVN help at http:/ www.rapidsvn.org/index.php? For EHMN maintenance, change the file in the web folder directory and make sure everything is working fine&...

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django-ma.blogspot.com

learning

Thursday, 29 September 2011. Methods, results visualization. As there are many gene sets (different classification of genes from different aspects) available. It might be interesting to compare all the different classifications to see how they are related with each other (e.g. GO and pathway maps). Genesets can be downloaded from GenesetDB, MsigBD. Maybe compile a list of experimentally identified gene sets from publications (such as disease related genes). Thursday, 7 July 2011. Thursday, 30 June 2011.

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