dome.csb.univie.ac.at
Open positions | Microbial Ecology, University of Vienna
http://dome.csb.univie.ac.at/open-positions
Dept of Microbiology and Ecosystem Science. PhD and postdoc program. Postdoc and PhD Positions available in Soil Microbial Ecology. One postdoc and one PhD position are available in a project that investigates the dynamics and genetic mechanisms of dormancy and resuscitation in terrestrial ecosystems. The positions are part of the ERC Starting grant project. Postdoc and PhD positions available in gut microbiology. The positions are funded by the ERC Starting Grant FunKeyGut. The position is funded by the...
dome.csb.univie.ac.at
International FISH course 2016 | Microbial Ecology, University of Vienna
http://dome.csb.univie.ac.at/news/international-fish-course-2016
Dept of Microbiology and Ecosystem Science. PhD and postdoc program. International FISH course 2016. For the International FISH course 2016, February 22-26. Environmental enteric dysfunction and growth failure/stunting in global child health. Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis. Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation. 43 1 4277 76601. 43 1 4277 876601.
dome.csb.univie.ac.at
Univ.-Prof. Dr. Matthias Horn | Microbial Ecology, University of Vienna
http://dome.csb.univie.ac.at/people/matthias-horn
Dept of Microbiology and Ecosystem Science. PhD and postdoc program. Univ-Prof. Dr. Matthias Horn. Deputy Head of the Division of Microbial Ecology. Department of Microbial Ecology and Ecosystem Science. Division of Microbial Ecology. 43 1 4277 76608. Microbial symbioses, with emphasis on bacterial symbionts of protozoa and insects. Evolution of intracellular bacteria. Molecular biology of intracellular bacteria and their interaction with eukaryotic host cells. The majority of bacteria possess a peptidog...
effectivedb.org
Documentation and support | EffectiveDB
http://www.effectivedb.org/help
Dept of Microbiology and Ecosystem Science. Job submission to EffectiveDB. Interpretation of EffectiveDB predictions. Frequently asked questions (FAQ). Q: Why the results with different arguments varies considerably, especially when I add EffectiveS346 arguments? Q: Can I run all these tools you used for the database also locally on new sequences/genomes? A: Yes, our computer cluster would be pleased! Q: What does this 'N.D.' mean, which I see sometimes at 'Gram negative:' and following lines? Prediction...
effectivedb.org
Download | EffectiveDB
http://www.effectivedb.org/download
Dept of Microbiology and Ecosystem Science. Precalculations for bacterial genomes. Browsable folder of results for all bacterial genomes from EggNOG 4.0 and selected additional genomes from NCBI RefSeq by NCBI taxonomy ID. ZIP archive of results for all bacterial EggNOG 4.0 genomes by NCBI taxonomy ID. Tab separated values file listing taxonomyids, names and predicted seretion systems for all bacterial EggNOG 4.0 genomes. Current and previous EffectiveELD. Browsable folder of EffectiveELD releases.
effectivedb.org
Effective job submission | EffectiveDB
http://www.effectivedb.org/effective/submit
Dept of Microbiology and Ecosystem Science. Prediction of secreted proteins and protein secretion systems. Main input for your job. Will only be used for job notification and is not stored on the server. One or multiple protein sequences in FASTA format:. FASTA formatted protein sequences. Upload a FASTA formatted protein sequence file. Predicts Type III secreted proteins based on their signal peptide. Select the version of the EffectiveT3. Predicts secreted proteins based on eukaryotic-like domains.
effectivedb.org
New EffectiveDB website | EffectiveDB
http://www.effectivedb.org/news/new-effectivedb-website
Dept of Microbiology and Ecosystem Science. EffectiveDB is now hosted in a new website. It is based on the Drupal. Framework and gives user-friendly access to the contents of the Effective database, allows the submission of compute jobs and provides documentation and supplementary data for specific methods of EffectiveDB. The EffectiveDB team appreciates your feedback on the new website. Prediction of microbial phenotypes based on comparative genomics. 43 1 4277 76681. 43 1 4277 876681.
effectivedb.org
Links | EffectiveDB
http://www.effectivedb.org/links
Dept of Microbiology and Ecosystem Science. Prediction of Type III secreted proteins. Prediction of Type IV secreted proteins. Proteins involved in bacterial secretion systems. EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29. New release 5.0 of Eukaryotic-like domains finished. EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems. Prediction of microbial phenotypes based on comparative genomics.
dome.csb.univie.ac.at
Assoc.-Prof. Dr. Alexander Loy | Microbial Ecology, University of Vienna
http://dome.csb.univie.ac.at/people/alexander-loy
Dept of Microbiology and Ecosystem Science. PhD and postdoc program. Assoc-Prof. Dr. Alexander Loy. Department of Microbiology and Ecosystem Science. Division of Microbial Ecology. 43 1 4277 76605. We are investigating the evolution of sulfur microorganisms by comparative phylogenetic analysis of key genes such as. Species in wetlands (. Pester et al. 2012. To accomplish our research goals, we use a holistic approach that combines molecular biology, genomic, and isotope-labeling techniques such as highly...
microbial-ecology.net
Staff | Microbial Ecology, University of Vienna
http://www.microbial-ecology.net/people
Dept of Microbiology and Ecosystem Science. PhD and postdoc program. Category (field tr staff category). Prof Dr. Dr. h. c. Michael Wagner. Head of the Department of Microbiology and Ecosystem Science. Head of the Division of Microbial Ecology. 43 1 4277 76600. Univ-Prof. Dr. Matthias Horn. Deputy Head of the Division of Microbial Ecology. 43 1 4277 76608. Assoc-Prof. Dr. Holger Daims. 43 1 4277 76604. Assoc-Prof. Dr. Alexander Loy. 43 1 4277 76605. Assoc-Prof. Dr. David Berry. 43 1 4277 76612. Mussels u...
